Rv0006 - c.195C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
66 Sensitive
5 RR-TB
35 HR-TB
14 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 87 |
| lineage2.1 | 3 |
| lineage4.8 | 21 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La2;lineage4.9 | 1 |
| lineage4 | 3 |
| 6 | |
| lineage4.1.1.1 | 1 |
| La3;lineage4.9 | 8 |
| lineage1.1;lineage4.1.3 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage4.9 | 4 |
| lineage4.2.1 | 1 |
| lineage4.1.2.1 | 5 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| lineage4.3.2.1 | 3 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.3.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.2.2;lineage4.8 | 1 |
| lineage4.3.3;lineage4.8 | 3 |
| M.canetti;lineage1 | 1 |
| lineage6 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| lineage3 | 2 |
| lineage2.2 | 1 |
| La1.6 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7 | 1 |
| La3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 196 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR369163 | Sensitive | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR14781928 | Other | lineage4.8 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR12341701 | Other | lineage4.8 | None | ERR4799025 | Other | lineage4.8 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR15014682 | MDR-TB | lineage4.8 | None | ERR4797201 | Other | None | ERR403261 | HR-TB | lineage4.8 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4816100 | Sensitive | lineage1.1;lineage4.1.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR11082907 | Other | lineage4.8 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR363502 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR13273271 | Other | lineage4.8 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR13284548 | RR-TB | lineage4.8 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR6831741 | Other | lineage4.8 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR11043168 | RR-TB | lineage4.8 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR14801754 | Sensitive | lineage4.8 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR18715457 | Other | lineage4.8 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR349299 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12006550 | Sensitive | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR11049971 | Other | lineage4.8 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR234659 | Other | None | ERR369159 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR14782019 | Other | lineage4.8 | None | SRR14782413 | Other | lineage4.8 | None | ERR133909 | HR-TB | lineage4.8 | ru | SRR6045503 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675265 | Other | lineage4 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR7645931 | Other | lineage4.8 | None | SRR29096276 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR13276119 | Other | lineage4.2.2;lineage4.8 | None | SRR6356938 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR4811311 | Other | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR9787030 | Sensitive | lineage6 | None | SRR6046802 | Other | lineage4.9 | None | SRR18715288 | Other | lineage4.8 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4817998 | Other | lineage3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR29539681 | HR-TB | lineage4.8 | None | ERR13276012 | Other | lineage4.8 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR11268038 | Other | La1.6 | None | ERR6359082 | Other | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2514721 | Other | lineage3 | gb | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176651 | Other | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR6356944 | Pre-XDR-TB | lineage4.3.3;lineage4.8 | None | SRR6356992 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283028 | Other | La3;lineage4 | None |
|---|
