Rv0668 - c.-387C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
114 Sensitive
43 RR-TB
38 HR-TB
22 MDR-TB
6 Pre-XDR-TB
2 XDR-TB
103 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.2.2 | 2 |
| lineage4.9 | 150 |
| lineage3 | 8 |
| lineage4.4.1.1 | 2 |
| lineage4.1.2.1 | 9 |
| La3;lineage4.9 | 13 |
| lineage2.2.1 | 17 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.6.1.1 | 4 |
| lineage4.2.1 | 3 |
| lineage3;lineage4.9 | 1 |
| lineage4.8 | 34 |
| lineage4.1.1.1 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 8 |
| La1.2.BCG | 2 |
| 4 | |
| La1.7;lineage4.9 | 5 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.3.2 | 2 |
| lineage1.2.1.1 | 1 |
| lineage3.1.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.8;lineage4.9 | 1 |
| lineage5.1.1 | 2 |
| lineage4.1 | 1 |
| lineage4 | 5 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage4.3.3 | 4 |
| lineage4.4.1.1.1 | 3 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage6 | 1 |
| La1.6 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage2.2.1.1 | 1 |
| La1.8.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage3.1.2.1 | 2 |
| lineage1.1.1 | 1 |
| lineage1.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 328 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4814976 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR978735 | Other | lineage4.8 | None | ERR373947 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR6046737 | Other | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR736831 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR9786843 | Other | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR212033 | Other | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173770 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR1166181 | Sensitive | lineage4.2.1 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR978727 | Other | lineage4.8 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR1034791 | RR-TB | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | ERR926157 | Sensitive | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR978761 | Other | lineage4.8 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR1238559 | Other | lineage4.9 | None | ERR405191 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR10796633 | Other | lineage4.3.4.2 | None | ERR6866410 | Sensitive | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR9120012 | MDR-TB | lineage4.3.2 | None | ERR736848 | Other | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR751336 | Sensitive | lineage5.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR9786525 | Other | lineage4 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR990545 | Other | lineage3 | None | SRR6045371 | Other | lineage4.9 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR926163 | Other | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR363502 | Other | lineage4.9 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR176751 | Other | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | SRR1915485 | Other | La1.2.BCG | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR473334 | HR-TB | lineage4.9 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4817060 | Other | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3078008 | MDR-TB | lineage4.6.1.1 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR3675265 | Other | lineage4 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6046117 | Other | lineage4.9 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR751317 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1049672 | Other | lineage3 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR1169306 | Other | La3;lineage4.9 | None | DRR184982 | Other | lineage2.2.1 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | SRR8692887 | Other | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR4829208 | Other | lineage4.8 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4820030 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR5987249 | MDR-TB | lineage4.3.2 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None |
|---|
