Run ID: ERR2513438
Sample name:
Date: 31-03-2023 19:40:47
Number of reads: 625172
Percentage reads mapped: 81.02
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.99 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5527 | c.288C>T | synonymous_variant | 0.12 |
gyrA | 7060 | c.-242T>C | upstream_gene_variant | 0.13 |
gyrA | 7066 | c.-236G>C | upstream_gene_variant | 0.2 |
gyrA | 7078 | c.-224A>T | upstream_gene_variant | 0.19 |
gyrA | 7084 | c.-218A>G | upstream_gene_variant | 0.25 |
gyrA | 7090 | c.-212C>T | upstream_gene_variant | 0.25 |
gyrA | 7093 | c.-209T>C | upstream_gene_variant | 0.27 |
gyrA | 7099 | c.-203G>A | upstream_gene_variant | 0.27 |
gyrA | 7100 | c.-202T>C | upstream_gene_variant | 0.27 |
gyrA | 7120 | c.-182T>C | upstream_gene_variant | 0.24 |
gyrA | 7123 | c.-179C>G | upstream_gene_variant | 0.24 |
gyrA | 7126 | c.-176G>C | upstream_gene_variant | 0.24 |
gyrA | 7129 | c.-173T>G | upstream_gene_variant | 0.24 |
gyrA | 7136 | c.-166T>C | upstream_gene_variant | 0.22 |
gyrA | 7144 | c.-158A>G | upstream_gene_variant | 0.22 |
gyrA | 7150 | c.-152G>A | upstream_gene_variant | 0.19 |
gyrA | 7153 | c.-149G>C | upstream_gene_variant | 0.19 |
gyrA | 7159 | c.-143C>T | upstream_gene_variant | 0.18 |
gyrA | 7162 | c.-140C>G | upstream_gene_variant | 0.15 |
gyrA | 7168 | c.-134C>G | upstream_gene_variant | 0.15 |
gyrA | 7178 | c.-124T>C | upstream_gene_variant | 0.15 |
gyrA | 7186 | c.-116C>G | upstream_gene_variant | 0.16 |
gyrA | 7189 | c.-113C>T | upstream_gene_variant | 0.16 |
gyrB | 7210 | p.Asp657Glu | missense_variant | 0.12 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7781 | c.480G>C | synonymous_variant | 0.15 |
gyrA | 7782 | p.Gln161Met | missense_variant | 0.14 |
gyrA | 7793 | c.492G>C | synonymous_variant | 0.15 |
gyrA | 7799 | c.498A>G | synonymous_variant | 0.13 |
gyrA | 7802 | c.501C>G | synonymous_variant | 0.13 |
gyrA | 7814 | c.513C>G | synonymous_variant | 0.15 |
gyrA | 8924 | c.1623C>T | synonymous_variant | 0.15 |
gyrA | 8945 | c.1644G>C | synonymous_variant | 0.14 |
gyrA | 8946 | c.1645_1647delTTGinsCTC | synonymous_variant | 0.14 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.93 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.29 |
rpoB | 760965 | p.Met387Leu | missense_variant | 0.33 |
rpoB | 760973 | c.1167G>T | synonymous_variant | 0.25 |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.27 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.27 |
rpoB | 760988 | c.1182C>G | synonymous_variant | 0.3 |
rpoB | 760991 | c.1185G>T | synonymous_variant | 0.3 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 0.36 |
rpoB | 761006 | c.1200C>T | synonymous_variant | 0.29 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.31 |
rpoB | 761027 | c.1221A>C | synonymous_variant | 0.25 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.27 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.27 |
rpoB | 761051 | c.1245G>T | synonymous_variant | 0.27 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.29 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.29 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.27 |
rpoB | 761063 | c.1257C>G | synonymous_variant | 0.27 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.24 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.17 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.17 |
rpoB | 761126 | c.1320G>T | synonymous_variant | 0.11 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.12 |
rpoB | 761198 | c.1392G>T | synonymous_variant | 0.12 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.18 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.12 |
rpoB | 761258 | c.1452G>A | synonymous_variant | 0.12 |
rpoB | 761261 | c.1455G>C | synonymous_variant | 0.12 |
rpoB | 761264 | c.1458C>G | synonymous_variant | 0.12 |
rpoB | 761273 | c.1467T>C | synonymous_variant | 0.14 |
rpoB | 761282 | c.1476C>T | synonymous_variant | 0.14 |
rpoB | 761288 | c.1482G>T | synonymous_variant | 0.13 |
rpoB | 761318 | c.1512G>C | synonymous_variant | 0.14 |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.13 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.12 |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.12 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.12 |
rpoB | 761990 | c.2184G>C | synonymous_variant | 0.11 |
rpoB | 762071 | c.2265C>T | synonymous_variant | 0.14 |
rpoB | 762158 | c.2352G>C | synonymous_variant | 0.11 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.12 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.19 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.19 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.18 |
rpoC | 762827 | c.-543G>C | upstream_gene_variant | 0.14 |
rpoC | 762830 | c.-540C>T | upstream_gene_variant | 0.13 |
rpoC | 762836 | c.-534C>T | upstream_gene_variant | 0.13 |
rpoC | 762857 | c.-513C>G | upstream_gene_variant | 0.18 |
rpoC | 762860 | c.-510G>C | upstream_gene_variant | 0.18 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.21 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.25 |
rpoC | 762894 | c.-476C>T | upstream_gene_variant | 0.27 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.28 |
rpoC | 762911 | c.-459C>T | upstream_gene_variant | 0.28 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.29 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.33 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.32 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 0.32 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.33 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.26 |
rpoC | 762989 | c.-381G>A | upstream_gene_variant | 0.24 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.23 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 0.18 |
rpoC | 763034 | c.-336C>A | upstream_gene_variant | 0.16 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.15 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.12 |
rpoC | 763259 | c.-111G>C | upstream_gene_variant | 0.12 |
rpoC | 763262 | c.-108C>T | upstream_gene_variant | 0.12 |
rpoC | 763268 | c.-102C>G | upstream_gene_variant | 0.12 |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.12 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.12 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.11 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.12 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.12 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.12 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.18 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.17 |
rpoC | 763708 | c.339G>T | synonymous_variant | 0.15 |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.15 |
rpoC | 763714 | c.345G>A | synonymous_variant | 0.13 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.15 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.14 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.14 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.14 |
rpoC | 763747 | c.378G>A | synonymous_variant | 0.14 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.13 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 0.12 |
rpoC | 764548 | c.1179G>A | synonymous_variant | 0.15 |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.17 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.17 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.14 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.14 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.19 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.18 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.13 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.13 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.19 |
rpoC | 764635 | c.1266C>T | synonymous_variant | 0.19 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.28 |
rpoC | 764713 | c.1344G>T | synonymous_variant | 0.2 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.19 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.19 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.19 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.19 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.18 |
rpoC | 764810 | p.Pro481Ala | missense_variant | 0.17 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.15 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.16 |
rpoC | 764887 | c.1518G>C | synonymous_variant | 0.12 |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.12 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.12 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.12 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.27 |
rpoC | 767002 | c.3633G>C | synonymous_variant | 0.27 |
rpoC | 767008 | c.3639G>A | synonymous_variant | 0.27 |
rpoC | 767044 | c.3675G>C | synonymous_variant | 0.44 |
rpoC | 767080 | c.3711G>C | synonymous_variant | 0.31 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.25 |
rpoC | 767100 | p.Lys1244Arg | missense_variant | 0.27 |
rpoC | 767104 | c.3735C>G | synonymous_variant | 0.25 |
rpoC | 767107 | c.3738C>T | synonymous_variant | 0.25 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.23 |
rpoC | 767125 | c.3756G>C | synonymous_variant | 0.23 |
rpoC | 767134 | c.3765C>T | synonymous_variant | 0.14 |
rpoC | 767138 | c.3769C>T | synonymous_variant | 0.15 |
rpoC | 767149 | c.3780C>T | synonymous_variant | 0.2 |
rpoC | 767167 | c.3798C>T | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.11 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.13 |
rpsL | 781706 | c.147T>G | synonymous_variant | 0.15 |
rpsL | 781715 | c.156T>G | synonymous_variant | 0.12 |
rplC | 800666 | c.-143C>T | upstream_gene_variant | 0.17 |
rplC | 800672 | c.-137G>C | upstream_gene_variant | 0.17 |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.16 |
rplC | 800703 | c.-106_-104delTTGinsCTC | upstream_gene_variant | 0.16 |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.16 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.16 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.15 |
rplC | 800735 | c.-74C>G | upstream_gene_variant | 0.15 |
rplC | 800747 | c.-62C>T | upstream_gene_variant | 0.15 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.25 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471985 | n.140T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472030 | n.185G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472031 | n.186G>C | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472032 | n.187G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472033 | n.188A>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472035 | n.190G>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472040 | n.195T>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472041 | n.196C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472042 | n.197T>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472043 | n.198T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472050 | n.205G>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472337 | n.492C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472380 | n.535G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472846 | n.1001C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472847 | n.1002G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472848 | n.1003T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472860 | n.1015C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472861 | n.1016G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473082 | n.1237G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473099 | n.1254T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473129 | n.1284C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473148 | n.1303G>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473163 | n.1318C>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473288 | n.1443C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473812 | n.155G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473814 | n.157A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473815 | n.158T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473829 | n.172G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473831 | n.174G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473832 | n.175C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473839 | n.182G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473887 | n.230T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473888 | n.231T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473923 | n.266C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474263 | n.606G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474282 | n.625G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474291 | n.635_649delTTCCTCTCCGGAGGA | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474680 | n.1023T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474717 | n.1060A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474722 | n.1065T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474743 | n.1086T>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474803 | n.1146G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475090 | n.1433A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475120 | n.1463G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475129 | n.1472G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475202 | n.1545G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475209 | n.1552G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475443 | n.1786G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475475 | n.1818C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475479 | n.1822C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475480 | n.1823A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475531 | n.1874C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475760 | n.2105_2106delGC | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475764 | n.2107A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475765 | n.2108A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476311 | n.2654G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.2 |
rpsA | 1833619 | c.78A>C | synonymous_variant | 0.12 |
rpsA | 1833625 | c.84A>G | synonymous_variant | 0.12 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.12 |
rpsA | 1833664 | c.123C>G | synonymous_variant | 0.12 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 0.14 |
rpsA | 1833679 | c.138G>T | synonymous_variant | 0.15 |
rpsA | 1833685 | c.144G>C | synonymous_variant | 0.15 |
rpsA | 1833709 | c.168C>T | synonymous_variant | 0.13 |
rpsA | 1833724 | c.183C>T | synonymous_variant | 0.13 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.14 |
rpsA | 1833733 | c.192C>G | synonymous_variant | 0.13 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.13 |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.15 |
rpsA | 1833751 | c.210C>T | synonymous_variant | 0.15 |
rpsA | 1833760 | c.219C>T | synonymous_variant | 0.17 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.14 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.14 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.14 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.17 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.18 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.18 |
rpsA | 1833838 | c.297G>T | synonymous_variant | 0.2 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.21 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.18 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.17 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.21 |
rpsA | 1833874 | c.333T>G | synonymous_variant | 0.19 |
rpsA | 1833886 | c.345C>G | synonymous_variant | 0.19 |
rpsA | 1833892 | c.351G>A | synonymous_variant | 0.2 |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.2 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.25 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.28 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.23 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.28 |
rpsA | 1833991 | c.450C>G | synonymous_variant | 0.31 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.31 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.28 |
rpsA | 1834012 | c.471G>T | synonymous_variant | 0.28 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.3 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.3 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.26 |
rpsA | 1834033 | c.492C>T | synonymous_variant | 0.26 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.17 |
rpsA | 1834073 | p.Lys178Arg | missense_variant | 0.17 |
rpsA | 1834097 | c.556_557delTCinsAG | synonymous_variant | 0.15 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.15 |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.15 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.18 |
rpsA | 1834396 | c.855G>T | synonymous_variant | 0.17 |
rpsA | 1834405 | c.864C>T | synonymous_variant | 0.17 |
rpsA | 1834408 | c.867C>T | synonymous_variant | 0.18 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.19 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.16 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.16 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.17 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.2 |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.18 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.19 |
rpsA | 1834480 | c.939C>G | synonymous_variant | 0.18 |
rpsA | 1834483 | c.942G>A | synonymous_variant | 0.18 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.18 |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155320 | c.792G>T | synonymous_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2715446 | c.-114T>A | upstream_gene_variant | 0.11 |
Rv2752c | 3064929 | c.1263G>T | synonymous_variant | 0.14 |
thyX | 3067276 | p.Pro224Thr | missense_variant | 0.12 |
thyX | 3067310 | c.636C>A | synonymous_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3877662 | c.846C>T | synonymous_variant | 0.12 |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.12 |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.14 |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.14 |
rpoA | 3877704 | c.804G>T | synonymous_variant | 0.16 |
rpoA | 3877728 | c.780C>G | synonymous_variant | 0.12 |
rpoA | 3877734 | c.774G>C | synonymous_variant | 0.12 |
rpoA | 3877737 | c.771G>C | synonymous_variant | 0.12 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.12 |
rpoA | 3877752 | p.Asp252Glu | missense_variant | 0.14 |
rpoA | 3877758 | c.750G>C | synonymous_variant | 0.14 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.14 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.14 |
rpoA | 3877773 | c.735G>C | synonymous_variant | 0.16 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.16 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.19 |
rpoA | 3877785 | c.723C>A | synonymous_variant | 0.22 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.19 |
rpoA | 3877839 | c.669G>T | synonymous_variant | 0.17 |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.17 |
rpoA | 3877856 | c.652T>C | synonymous_variant | 0.14 |
rpoA | 3877860 | c.648C>T | synonymous_variant | 0.14 |
rpoA | 3877875 | c.633T>C | synonymous_variant | 0.14 |
rpoA | 3877881 | c.627G>C | synonymous_variant | 0.13 |
rpoA | 3877887 | c.621G>C | synonymous_variant | 0.12 |
rpoA | 3877893 | c.615C>T | synonymous_variant | 0.13 |
rpoA | 3877900 | p.Ser203Thr | missense_variant | 0.12 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.12 |
rpoA | 3878070 | c.438T>C | synonymous_variant | 0.14 |
rpoA | 3878079 | c.429C>T | synonymous_variant | 0.14 |
rpoA | 3878082 | c.426T>C | synonymous_variant | 0.14 |
rpoA | 3878102 | p.Val136Ile | missense_variant | 0.14 |
rpoA | 3878103 | c.405A>G | synonymous_variant | 0.14 |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.14 |
rpoA | 3878127 | c.381G>C | synonymous_variant | 0.12 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.12 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.13 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.12 |
rpoA | 3878301 | c.207C>G | synonymous_variant | 0.12 |
rpoA | 3878307 | c.201C>T | synonymous_variant | 0.11 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.11 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.11 |
clpC1 | 4038755 | c.1950G>C | synonymous_variant | 0.12 |
clpC1 | 4038767 | c.1938G>T | synonymous_variant | 0.12 |
clpC1 | 4038770 | c.1935C>A | synonymous_variant | 0.12 |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.12 |
clpC1 | 4038779 | c.1926C>A | synonymous_variant | 0.13 |
clpC1 | 4038782 | c.1923G>T | synonymous_variant | 0.13 |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.13 |
clpC1 | 4038795 | p.Ser637Thr | missense_variant | 0.13 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.15 |
clpC1 | 4038842 | c.1863G>T | synonymous_variant | 0.33 |
clpC1 | 4038845 | c.1858_1860delTCGinsAGC | synonymous_variant | 0.38 |
clpC1 | 4038860 | c.1845G>T | synonymous_variant | 0.3 |
clpC1 | 4039265 | c.1440C>T | synonymous_variant | 0.14 |
clpC1 | 4039328 | c.1377A>G | synonymous_variant | 0.12 |
clpC1 | 4039336 | c.1369C>T | synonymous_variant | 0.13 |
clpC1 | 4039338 | p.Thr456Gln | missense_variant | 0.12 |
clpC1 | 4039346 | p.Arg453Ser | missense_variant | 0.13 |
clpC1 | 4039360 | p.Ser449Arg | missense_variant | 0.14 |
clpC1 | 4039361 | c.1344C>T | synonymous_variant | 0.2 |
clpC1 | 4039391 | c.1314T>C | synonymous_variant | 0.12 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.15 |
clpC1 | 4039522 | c.1183C>T | synonymous_variant | 0.17 |
clpC1 | 4039541 | c.1164C>G | synonymous_variant | 0.17 |
clpC1 | 4039544 | c.1161C>T | synonymous_variant | 0.2 |
clpC1 | 4039553 | c.1152C>T | synonymous_variant | 0.19 |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.21 |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 0.21 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.21 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.21 |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.19 |
clpC1 | 4039574 | p.Ala377Gly | missense_variant | 0.2 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.21 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.23 |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.22 |
clpC1 | 4039610 | c.1095G>T | synonymous_variant | 0.25 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.25 |
clpC1 | 4039649 | c.1056G>T | synonymous_variant | 0.15 |
clpC1 | 4039652 | c.1053G>T | synonymous_variant | 0.15 |
clpC1 | 4039661 | c.1044T>C | synonymous_variant | 0.14 |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.13 |
clpC1 | 4039739 | c.966C>G | synonymous_variant | 0.12 |
clpC1 | 4039775 | c.930G>C | synonymous_variant | 0.14 |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.14 |
clpC1 | 4039820 | c.885T>G | synonymous_variant | 0.12 |
clpC1 | 4039831 | c.874T>C | synonymous_variant | 0.18 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.12 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.12 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.15 |
clpC1 | 4039907 | c.798G>A | synonymous_variant | 0.14 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.13 |
clpC1 | 4039934 | c.771G>C | synonymous_variant | 0.12 |
clpC1 | 4039943 | c.762G>C | synonymous_variant | 0.12 |
clpC1 | 4039946 | c.759A>G | synonymous_variant | 0.12 |
clpC1 | 4039949 | c.756G>C | synonymous_variant | 0.12 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.12 |
clpC1 | 4039958 | c.747G>C | synonymous_variant | 0.14 |
clpC1 | 4039964 | c.741C>G | synonymous_variant | 0.17 |
clpC1 | 4039975 | p.Asp244Asn | missense_variant | 0.14 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.14 |
clpC1 | 4039982 | c.723G>A | synonymous_variant | 0.14 |
clpC1 | 4040000 | c.705C>T | synonymous_variant | 0.12 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.17 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.17 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.18 |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 0.19 |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 0.2 |
clpC1 | 4040087 | c.618G>T | synonymous_variant | 0.16 |
clpC1 | 4040090 | c.613_615delTCTinsAGC | synonymous_variant | 0.16 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 0.17 |
clpC1 | 4040141 | c.564C>T | synonymous_variant | 0.12 |
clpC1 | 4040144 | c.561G>C | synonymous_variant | 0.13 |
clpC1 | 4040147 | c.558A>G | synonymous_variant | 0.13 |
clpC1 | 4040153 | c.552A>G | synonymous_variant | 0.12 |
clpC1 | 4040159 | c.546G>C | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4245101 | c.1869G>C | synonymous_variant | 0.12 |
embA | 4245125 | c.1893G>C | synonymous_variant | 0.11 |
aftB | 4267194 | p.Pro548Gln | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |