TB-Profiler result

Run: ERR2513438
Summary

Run ID: ERR2513438

Sample name:

Date: 31-03-2023 19:40:47

Number of reads: 625172

Percentage reads mapped: 81.02

Strain: lineage4.1.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 0.99
lineage4.1.2 Euro-American T;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5527 c.288C>T synonymous_variant 0.12
gyrA 7060 c.-242T>C upstream_gene_variant 0.13
gyrA 7066 c.-236G>C upstream_gene_variant 0.2
gyrA 7078 c.-224A>T upstream_gene_variant 0.19
gyrA 7084 c.-218A>G upstream_gene_variant 0.25
gyrA 7090 c.-212C>T upstream_gene_variant 0.25
gyrA 7093 c.-209T>C upstream_gene_variant 0.27
gyrA 7099 c.-203G>A upstream_gene_variant 0.27
gyrA 7100 c.-202T>C upstream_gene_variant 0.27
gyrA 7120 c.-182T>C upstream_gene_variant 0.24
gyrA 7123 c.-179C>G upstream_gene_variant 0.24
gyrA 7126 c.-176G>C upstream_gene_variant 0.24
gyrA 7129 c.-173T>G upstream_gene_variant 0.24
gyrA 7136 c.-166T>C upstream_gene_variant 0.22
gyrA 7144 c.-158A>G upstream_gene_variant 0.22
gyrA 7150 c.-152G>A upstream_gene_variant 0.19
gyrA 7153 c.-149G>C upstream_gene_variant 0.19
gyrA 7159 c.-143C>T upstream_gene_variant 0.18
gyrA 7162 c.-140C>G upstream_gene_variant 0.15
gyrA 7168 c.-134C>G upstream_gene_variant 0.15
gyrA 7178 c.-124T>C upstream_gene_variant 0.15
gyrA 7186 c.-116C>G upstream_gene_variant 0.16
gyrA 7189 c.-113C>T upstream_gene_variant 0.16
gyrB 7210 p.Asp657Glu missense_variant 0.12
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7781 c.480G>C synonymous_variant 0.15
gyrA 7782 p.Gln161Met missense_variant 0.14
gyrA 7793 c.492G>C synonymous_variant 0.15
gyrA 7799 c.498A>G synonymous_variant 0.13
gyrA 7802 c.501C>G synonymous_variant 0.13
gyrA 7814 c.513C>G synonymous_variant 0.15
gyrA 8924 c.1623C>T synonymous_variant 0.15
gyrA 8945 c.1644G>C synonymous_variant 0.14
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.14
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 0.93
rpoB 760946 c.1140A>G synonymous_variant 0.29
rpoB 760965 p.Met387Leu missense_variant 0.33
rpoB 760973 c.1167G>T synonymous_variant 0.25
rpoB 760982 c.1176G>C synonymous_variant 0.27
rpoB 760985 c.1179G>C synonymous_variant 0.27
rpoB 760988 c.1182C>G synonymous_variant 0.3
rpoB 760991 c.1185G>T synonymous_variant 0.3
rpoB 760997 c.1191G>C synonymous_variant 0.36
rpoB 761006 c.1200C>T synonymous_variant 0.29
rpoB 761015 c.1209G>C synonymous_variant 0.31
rpoB 761027 c.1221A>C synonymous_variant 0.25
rpoB 761036 c.1230G>C synonymous_variant 0.27
rpoB 761037 c.1231T>C synonymous_variant 0.27
rpoB 761051 c.1245G>T synonymous_variant 0.27
rpoB 761054 c.1248G>C synonymous_variant 0.29
rpoB 761057 c.1251G>C synonymous_variant 0.29
rpoB 761060 c.1254C>G synonymous_variant 0.27
rpoB 761063 c.1257C>G synonymous_variant 0.27
rpoB 761084 c.1278C>A synonymous_variant 0.24
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.17
rpoB 761102 c.1296A>G synonymous_variant 0.17
rpoB 761126 c.1320G>T synonymous_variant 0.11
rpoB 761195 c.1389G>C synonymous_variant 0.12
rpoB 761198 c.1392G>T synonymous_variant 0.12
rpoB 761219 c.1413G>C synonymous_variant 0.18
rpoB 761234 c.1428G>C synonymous_variant 0.12
rpoB 761258 c.1452G>A synonymous_variant 0.12
rpoB 761261 c.1455G>C synonymous_variant 0.12
rpoB 761264 c.1458C>G synonymous_variant 0.12
rpoB 761273 c.1467T>C synonymous_variant 0.14
rpoB 761282 c.1476C>T synonymous_variant 0.14
rpoB 761288 c.1482G>T synonymous_variant 0.13
rpoB 761318 c.1512G>C synonymous_variant 0.14
rpoB 761327 c.1521A>G synonymous_variant 0.13
rpoB 761570 c.1764T>C synonymous_variant 0.12
rpoB 761573 c.1767C>G synonymous_variant 0.12
rpoB 761579 c.1773G>C synonymous_variant 0.12
rpoB 761990 c.2184G>C synonymous_variant 0.11
rpoB 762071 c.2265C>T synonymous_variant 0.14
rpoB 762158 c.2352G>C synonymous_variant 0.11
rpoB 762167 c.2361T>C synonymous_variant 0.12
rpoB 762176 c.2370T>C synonymous_variant 0.19
rpoB 762185 c.2379G>C synonymous_variant 0.19
rpoB 762194 c.2388G>C synonymous_variant 0.18
rpoC 762827 c.-543G>C upstream_gene_variant 0.14
rpoC 762830 c.-540C>T upstream_gene_variant 0.13
rpoC 762836 c.-534C>T upstream_gene_variant 0.13
rpoC 762857 c.-513C>G upstream_gene_variant 0.18
rpoC 762860 c.-510G>C upstream_gene_variant 0.18
rpoC 762863 c.-507T>C upstream_gene_variant 0.21
rpoB 762879 p.Met1025Leu missense_variant 0.25
rpoC 762894 c.-476C>T upstream_gene_variant 0.27
rpoC 762899 c.-471G>C upstream_gene_variant 0.28
rpoC 762911 c.-459C>T upstream_gene_variant 0.28
rpoC 762917 c.-453C>G upstream_gene_variant 0.29
rpoC 762920 c.-450C>T upstream_gene_variant 0.33
rpoC 762923 c.-447C>G upstream_gene_variant 0.32
rpoC 762959 c.-411G>C upstream_gene_variant 0.32
rpoC 762962 c.-408C>T upstream_gene_variant 0.33
rpoC 762983 c.-387C>T upstream_gene_variant 0.26
rpoC 762989 c.-381G>A upstream_gene_variant 0.24
rpoC 762995 c.-375G>T upstream_gene_variant 0.23
rpoC 763031 c.-339T>G upstream_gene_variant 0.18
rpoC 763034 c.-336C>A upstream_gene_variant 0.16
rpoC 763040 c.-330C>G upstream_gene_variant 0.15
rpoC 763070 c.-300T>C upstream_gene_variant 0.12
rpoC 763259 c.-111G>C upstream_gene_variant 0.12
rpoC 763262 c.-108C>T upstream_gene_variant 0.12
rpoC 763268 c.-102C>G upstream_gene_variant 0.12
rpoC 763618 c.249C>T synonymous_variant 0.12
rpoC 763633 c.264T>C synonymous_variant 0.12
rpoC 763660 c.291T>G synonymous_variant 0.11
rpoC 763666 c.297G>C synonymous_variant 0.12
rpoC 763669 c.300C>G synonymous_variant 0.12
rpoC 763675 c.306C>G synonymous_variant 0.12
rpoC 763699 c.330G>T synonymous_variant 0.18
rpoC 763702 c.333C>G synonymous_variant 0.17
rpoC 763708 c.339G>T synonymous_variant 0.15
rpoC 763711 c.342G>C synonymous_variant 0.15
rpoC 763714 c.345G>A synonymous_variant 0.13
rpoC 763717 c.348T>C synonymous_variant 0.15
rpoC 763723 c.354G>C synonymous_variant 0.14
rpoC 763732 c.363C>G synonymous_variant 0.14
rpoC 763741 c.372C>T synonymous_variant 0.14
rpoC 763747 c.378G>A synonymous_variant 0.14
rpoC 764431 c.1062G>C synonymous_variant 0.13
rpoC 764435 c.1066A>C synonymous_variant 0.12
rpoC 764548 c.1179G>A synonymous_variant 0.15
rpoC 764554 c.1185C>T synonymous_variant 0.17
rpoC 764566 c.1197C>G synonymous_variant 0.17
rpoC 764575 c.1206T>G synonymous_variant 0.14
rpoC 764578 c.1209C>G synonymous_variant 0.14
rpoC 764593 c.1224C>T synonymous_variant 0.19
rpoC 764602 c.1233C>T synonymous_variant 0.18
rpoC 764611 c.1242G>T synonymous_variant 0.13
rpoC 764626 c.1257C>T synonymous_variant 0.13
rpoC 764632 c.1263T>C synonymous_variant 0.19
rpoC 764635 c.1266C>T synonymous_variant 0.19
rpoC 764650 c.1281G>T synonymous_variant 0.28
rpoC 764713 c.1344G>T synonymous_variant 0.2
rpoC 764746 c.1377G>T synonymous_variant 0.19
rpoC 764752 c.1383G>C synonymous_variant 0.19
rpoC 764758 c.1389C>G synonymous_variant 0.19
rpoC 764764 c.1395T>C synonymous_variant 0.19
rpoC 764803 c.1434C>T synonymous_variant 0.18
rpoC 764810 p.Pro481Ala missense_variant 0.17
rpoC 764827 c.1458G>C synonymous_variant 0.15
rpoC 764858 c.1489T>C synonymous_variant 0.16
rpoC 764887 c.1518G>C synonymous_variant 0.12
rpoC 764888 c.1519T>C synonymous_variant 0.12
rpoC 764932 c.1563C>A synonymous_variant 0.12
rpoC 764968 c.1599T>C synonymous_variant 0.12
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 766996 c.3627C>T synonymous_variant 0.27
rpoC 767002 c.3633G>C synonymous_variant 0.27
rpoC 767008 c.3639G>A synonymous_variant 0.27
rpoC 767044 c.3675G>C synonymous_variant 0.44
rpoC 767080 c.3711G>C synonymous_variant 0.31
rpoC 767098 c.3729T>C synonymous_variant 0.25
rpoC 767100 p.Lys1244Arg missense_variant 0.27
rpoC 767104 c.3735C>G synonymous_variant 0.25
rpoC 767107 c.3738C>T synonymous_variant 0.25
rpoC 767119 c.3750A>G synonymous_variant 0.23
rpoC 767125 c.3756G>C synonymous_variant 0.23
rpoC 767134 c.3765C>T synonymous_variant 0.14
rpoC 767138 c.3769C>T synonymous_variant 0.15
rpoC 767149 c.3780C>T synonymous_variant 0.2
rpoC 767167 c.3798C>T synonymous_variant 0.11
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781658 c.99A>G synonymous_variant 0.11
rpsL 781682 c.123T>C synonymous_variant 0.13
rpsL 781706 c.147T>G synonymous_variant 0.15
rpsL 781715 c.156T>G synonymous_variant 0.12
rplC 800666 c.-143C>T upstream_gene_variant 0.17
rplC 800672 c.-137G>C upstream_gene_variant 0.17
rplC 800693 c.-116A>C upstream_gene_variant 0.16
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.16
rplC 800715 c.-94A>C upstream_gene_variant 0.16
rplC 800720 c.-89T>C upstream_gene_variant 0.16
rplC 800723 c.-86C>G upstream_gene_variant 0.15
rplC 800735 c.-74C>G upstream_gene_variant 0.15
rplC 800747 c.-62C>T upstream_gene_variant 0.15
fbiC 1303016 p.Val29Gly missense_variant 0.25
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.38
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.38
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.56
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.56
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 0.56
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.62
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.62
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.62
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.71
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.71
rrs 1472043 n.198T>A non_coding_transcript_exon_variant 0.71
rrs 1472050 n.205G>C non_coding_transcript_exon_variant 0.83
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.83
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.71
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.8
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.8
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.8
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.6
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 1.0
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 1.0
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.5
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.5
rrs 1472846 n.1001C>T non_coding_transcript_exon_variant 0.67
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 0.67
rrs 1472848 n.1003T>C non_coding_transcript_exon_variant 0.67
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.71
rrs 1472861 n.1016G>A non_coding_transcript_exon_variant 0.71
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.54
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.54
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.4
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.4
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.36
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.36
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.36
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.43
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.42
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.43
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.43
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.46
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.46
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.46
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.5
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.5
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.57
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.4
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.13
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.13
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.5
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.15
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.18
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.29
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.29
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.29
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.67
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 0.67
rrl 1473814 n.157A>T non_coding_transcript_exon_variant 0.67
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.67
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 1.0
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 1.0
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 1.0
rrl 1473839 n.182G>A non_coding_transcript_exon_variant 1.0
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.5
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.5
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.5
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.5
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.5
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.4
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.4
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.6
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.6
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 1.0
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.67
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.67
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.67
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.67
rrl 1474680 n.1023T>C non_coding_transcript_exon_variant 0.67
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.67
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.67
rrl 1474743 n.1086T>G non_coding_transcript_exon_variant 0.6
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.6
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.6
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.6
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.75
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.67
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.5
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.67
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.67
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.4
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.4
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.4
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.5
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.5
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.5
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.5
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.5
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.6
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.75
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.75
rrl 1475760 n.2105_2106delGC non_coding_transcript_exon_variant 1.0
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>A non_coding_transcript_exon_variant 0.38
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.17
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.17
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.18
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.18
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.2
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.25
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.2
rpsA 1833619 c.78A>C synonymous_variant 0.12
rpsA 1833625 c.84A>G synonymous_variant 0.12
rpsA 1833661 c.120A>G synonymous_variant 0.12
rpsA 1833664 c.123C>G synonymous_variant 0.12
rpsA 1833676 c.135A>G synonymous_variant 0.14
rpsA 1833679 c.138G>T synonymous_variant 0.15
rpsA 1833685 c.144G>C synonymous_variant 0.15
rpsA 1833709 c.168C>T synonymous_variant 0.13
rpsA 1833724 c.183C>T synonymous_variant 0.13
rpsA 1833727 c.186G>C synonymous_variant 0.14
rpsA 1833733 c.192C>G synonymous_variant 0.13
rpsA 1833734 p.Ala65Ser missense_variant 0.13
rpsA 1833748 c.207C>G synonymous_variant 0.15
rpsA 1833751 c.210C>T synonymous_variant 0.15
rpsA 1833760 c.219C>T synonymous_variant 0.17
rpsA 1833787 c.246C>G synonymous_variant 0.14
rpsA 1833790 c.249T>C synonymous_variant 0.14
rpsA 1833802 c.261A>G synonymous_variant 0.14
rpsA 1833811 c.270G>C synonymous_variant 0.17
rpsA 1833829 c.288A>G synonymous_variant 0.18
rpsA 1833832 c.291G>A synonymous_variant 0.18
rpsA 1833838 c.297G>T synonymous_variant 0.2
rpsA 1833841 c.300C>G synonymous_variant 0.21
rpsA 1833847 c.306C>G synonymous_variant 0.18
rpsA 1833856 c.315A>G synonymous_variant 0.17
rpsA 1833862 c.321G>T synonymous_variant 0.21
rpsA 1833874 c.333T>G synonymous_variant 0.19
rpsA 1833886 c.345C>G synonymous_variant 0.19
rpsA 1833892 c.351G>A synonymous_variant 0.2
rpsA 1833894 p.Ala118Glu missense_variant 0.2
rpsA 1833928 c.387G>C synonymous_variant 0.25
rpsA 1833949 c.408T>C synonymous_variant 0.28
rpsA 1833970 c.429G>C synonymous_variant 0.23
rpsA 1833979 c.438T>C synonymous_variant 0.28
rpsA 1833991 c.450C>G synonymous_variant 0.31
rpsA 1834000 c.459G>C synonymous_variant 0.31
rpsA 1834009 c.468C>T synonymous_variant 0.28
rpsA 1834012 c.471G>T synonymous_variant 0.28
rpsA 1834015 c.474G>C synonymous_variant 0.3
rpsA 1834021 c.480C>T synonymous_variant 0.3
rpsA 1834030 c.489C>G synonymous_variant 0.26
rpsA 1834033 c.492C>T synonymous_variant 0.26
rpsA 1834069 c.528G>C synonymous_variant 0.17
rpsA 1834073 p.Lys178Arg missense_variant 0.17
rpsA 1834097 c.556_557delTCinsAG synonymous_variant 0.15
rpsA 1834366 c.825A>G synonymous_variant 0.15
rpsA 1834375 c.834G>A synonymous_variant 0.15
rpsA 1834378 c.837T>C synonymous_variant 0.18
rpsA 1834396 c.855G>T synonymous_variant 0.17
rpsA 1834405 c.864C>T synonymous_variant 0.17
rpsA 1834408 c.867C>T synonymous_variant 0.18
rpsA 1834411 c.870T>C synonymous_variant 0.19
rpsA 1834417 c.876G>C synonymous_variant 0.16
rpsA 1834423 c.882G>C synonymous_variant 0.16
rpsA 1834435 c.894G>C synonymous_variant 0.17
rpsA 1834451 c.910T>C synonymous_variant 0.2
rpsA 1834456 c.915T>G synonymous_variant 0.18
rpsA 1834468 c.927A>G synonymous_variant 0.19
rpsA 1834480 c.939C>G synonymous_variant 0.18
rpsA 1834483 c.942G>A synonymous_variant 0.18
rpsA 1834489 c.948T>C synonymous_variant 0.18
rpsA 1834498 c.957C>T synonymous_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155320 c.792G>T synonymous_variant 0.12
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
eis 2715446 c.-114T>A upstream_gene_variant 0.11
Rv2752c 3064929 c.1263G>T synonymous_variant 0.14
thyX 3067276 p.Pro224Thr missense_variant 0.12
thyX 3067310 c.636C>A synonymous_variant 0.12
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877662 c.846C>T synonymous_variant 0.12
rpoA 3877668 c.840A>G synonymous_variant 0.12
rpoA 3877686 c.822A>G synonymous_variant 0.14
rpoA 3877692 c.816G>C synonymous_variant 0.14
rpoA 3877704 c.804G>T synonymous_variant 0.16
rpoA 3877728 c.780C>G synonymous_variant 0.12
rpoA 3877734 c.774G>C synonymous_variant 0.12
rpoA 3877737 c.771G>C synonymous_variant 0.12
rpoA 3877743 c.765T>C synonymous_variant 0.12
rpoA 3877752 p.Asp252Glu missense_variant 0.14
rpoA 3877758 c.750G>C synonymous_variant 0.14
rpoA 3877764 c.744C>G synonymous_variant 0.14
rpoA 3877770 c.738A>G synonymous_variant 0.14
rpoA 3877773 c.735G>C synonymous_variant 0.16
rpoA 3877776 c.732T>C synonymous_variant 0.16
rpoA 3877782 c.726T>C synonymous_variant 0.19
rpoA 3877785 c.723C>A synonymous_variant 0.22
rpoA 3877818 c.690A>G synonymous_variant 0.19
rpoA 3877839 c.669G>T synonymous_variant 0.17
rpoA 3877848 c.660C>T synonymous_variant 0.17
rpoA 3877856 c.652T>C synonymous_variant 0.14
rpoA 3877860 c.648C>T synonymous_variant 0.14
rpoA 3877875 c.633T>C synonymous_variant 0.14
rpoA 3877881 c.627G>C synonymous_variant 0.13
rpoA 3877887 c.621G>C synonymous_variant 0.12
rpoA 3877893 c.615C>T synonymous_variant 0.13
rpoA 3877900 p.Ser203Thr missense_variant 0.12
rpoA 3877905 c.603A>G synonymous_variant 0.12
rpoA 3878070 c.438T>C synonymous_variant 0.14
rpoA 3878079 c.429C>T synonymous_variant 0.14
rpoA 3878082 c.426T>C synonymous_variant 0.14
rpoA 3878102 p.Val136Ile missense_variant 0.14
rpoA 3878103 c.405A>G synonymous_variant 0.14
rpoA 3878118 c.390T>C synonymous_variant 0.14
rpoA 3878127 c.381G>C synonymous_variant 0.12
rpoA 3878283 p.Glu75Asp missense_variant 0.12
rpoA 3878292 c.216T>C synonymous_variant 0.13
rpoA 3878298 c.210A>G synonymous_variant 0.12
rpoA 3878301 c.207C>G synonymous_variant 0.12
rpoA 3878307 c.201C>T synonymous_variant 0.11
rpoA 3878313 c.195G>C synonymous_variant 0.11
rpoA 3878322 c.186A>G synonymous_variant 0.11
clpC1 4038755 c.1950G>C synonymous_variant 0.12
clpC1 4038767 c.1938G>T synonymous_variant 0.12
clpC1 4038770 c.1935C>A synonymous_variant 0.12
clpC1 4038773 c.1932T>C synonymous_variant 0.12
clpC1 4038779 c.1926C>A synonymous_variant 0.13
clpC1 4038782 c.1923G>T synonymous_variant 0.13
clpC1 4038790 c.1915C>T synonymous_variant 0.13
clpC1 4038795 p.Ser637Thr missense_variant 0.13
clpC1 4038812 c.1893T>C synonymous_variant 0.15
clpC1 4038842 c.1863G>T synonymous_variant 0.33
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 0.38
clpC1 4038860 c.1845G>T synonymous_variant 0.3
clpC1 4039265 c.1440C>T synonymous_variant 0.14
clpC1 4039328 c.1377A>G synonymous_variant 0.12
clpC1 4039336 c.1369C>T synonymous_variant 0.13
clpC1 4039338 p.Thr456Gln missense_variant 0.12
clpC1 4039346 p.Arg453Ser missense_variant 0.13
clpC1 4039360 p.Ser449Arg missense_variant 0.14
clpC1 4039361 c.1344C>T synonymous_variant 0.2
clpC1 4039391 c.1314T>C synonymous_variant 0.12
clpC1 4039517 c.1188C>G synonymous_variant 0.15
clpC1 4039522 c.1183C>T synonymous_variant 0.17
clpC1 4039541 c.1164C>G synonymous_variant 0.17
clpC1 4039544 c.1161C>T synonymous_variant 0.2
clpC1 4039553 c.1152C>T synonymous_variant 0.19
clpC1 4039556 c.1149G>C synonymous_variant 0.21
clpC1 4039559 c.1146C>G synonymous_variant 0.21
clpC1 4039562 c.1143C>G synonymous_variant 0.21
clpC1 4039565 c.1140G>C synonymous_variant 0.21
clpC1 4039570 p.Met379Leu missense_variant 0.19
clpC1 4039574 p.Ala377Gly missense_variant 0.2
clpC1 4039577 c.1128T>C synonymous_variant 0.21
clpC1 4039586 c.1119G>C synonymous_variant 0.23
clpC1 4039589 c.1116G>C synonymous_variant 0.22
clpC1 4039610 c.1095G>T synonymous_variant 0.25
clpC1 4039616 c.1089G>C synonymous_variant 0.25
clpC1 4039649 c.1056G>T synonymous_variant 0.15
clpC1 4039652 c.1053G>T synonymous_variant 0.15
clpC1 4039661 c.1044T>C synonymous_variant 0.14
clpC1 4039733 c.972G>C synonymous_variant 0.13
clpC1 4039739 c.966C>G synonymous_variant 0.12
clpC1 4039775 c.930G>C synonymous_variant 0.14
clpC1 4039778 c.927A>G synonymous_variant 0.14
clpC1 4039820 c.885T>G synonymous_variant 0.12
clpC1 4039831 c.874T>C synonymous_variant 0.18
clpC1 4039850 c.855T>C synonymous_variant 0.12
clpC1 4039865 c.840T>C synonymous_variant 0.12
clpC1 4039904 c.801A>G synonymous_variant 0.15
clpC1 4039907 c.798G>A synonymous_variant 0.14
clpC1 4039931 c.774T>C synonymous_variant 0.13
clpC1 4039934 c.771G>C synonymous_variant 0.12
clpC1 4039943 c.762G>C synonymous_variant 0.12
clpC1 4039946 c.759A>G synonymous_variant 0.12
clpC1 4039949 c.756G>C synonymous_variant 0.12
clpC1 4039952 c.753T>C synonymous_variant 0.12
clpC1 4039958 c.747G>C synonymous_variant 0.14
clpC1 4039964 c.741C>G synonymous_variant 0.17
clpC1 4039975 p.Asp244Asn missense_variant 0.14
clpC1 4039979 c.726C>G synonymous_variant 0.14
clpC1 4039982 c.723G>A synonymous_variant 0.14
clpC1 4040000 c.705C>T synonymous_variant 0.12
clpC1 4040021 c.684A>C synonymous_variant 0.17
clpC1 4040024 c.681A>G synonymous_variant 0.17
clpC1 4040033 c.672G>C synonymous_variant 0.18
clpC1 4040042 c.663C>T synonymous_variant 0.19
clpC1 4040057 c.648C>T synonymous_variant 0.2
clpC1 4040087 c.618G>T synonymous_variant 0.16
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.16
clpC1 4040093 c.612C>G synonymous_variant 0.17
clpC1 4040141 c.564C>T synonymous_variant 0.12
clpC1 4040144 c.561G>C synonymous_variant 0.13
clpC1 4040147 c.558A>G synonymous_variant 0.13
clpC1 4040153 c.552A>G synonymous_variant 0.12
clpC1 4040159 c.546G>C synonymous_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embA 4245101 c.1869G>C synonymous_variant 0.12
embA 4245125 c.1893G>C synonymous_variant 0.11
aftB 4267194 p.Pro548Gln missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0