Rv3596c - c.1440C>T
Drug resistance types
82 Sensitive
0 RR-TB
20 HR-TB
6 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.9 | 86 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage4 | 4 |
| lineage4.1.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2.1 | 5 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1 | 7 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.5 | 2 |
| lineage3 | 1 |
| lineage4.3.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.4.1.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| lineage2.2.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| 1 | |
| La1.6;lineage4 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage2.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 146 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR26112147 | Sensitive | lineage4.8 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR6046245 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR369162 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4817998 | Other | lineage3 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR12328162 | Other | lineage4.5 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None |
|---|
