Rv1630 - c.1014T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
113 Sensitive
3 RR-TB
36 HR-TB
16 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
105 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 144 |
| lineage4.9;lineage6.3 | 3 |
| lineage4.1.2.1 | 9 |
| lineage1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.5 | 1 |
| 15 | |
| lineage4.4.1.1.1 | 2 |
| lineage2.1;lineage4.9 | 9 |
| lineage4.6.2.2 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| La2;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.2.1;lineage4 | 2 |
| lineage2.2.1 | 13 |
| lineage4.8 | 4 |
| lineage4.1.1.1 | 1 |
| lineage4 | 6 |
| lineage6 | 1 |
| lineage6.1.1 | 2 |
| lineage4.7 | 1 |
| lineage3 | 5 |
| lineage5.2 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.3.3 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage5.1.4 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.3.3;lineage4.3.4.1 | 1 |
| La2;lineage2.2 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage4.3.4 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage1.1.3.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 276 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045503 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR18213713 | HR-TB | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4872096 | MDR-TB | lineage4.6.2.2 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR7496517 | Other | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR176741 | Other | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR9787030 | Sensitive | lineage6 | None | ERR349299 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786076 | Sensitive | lineage3 | None | SRR6045371 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR6046802 | Other | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR9786443 | Sensitive | lineage4.8 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR29097037 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR4817060 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR2517475 | Other | lineage4 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675572 | Other | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR4818615 | Sensitive | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR9786508 | Sensitive | lineage4.3.3;lineage4.3.4.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176651 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4816999 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6789626 | Other | None | ERR363449 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815752 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR29096150 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR3797070 | Other | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR9787197 | Other | None | ERR369159 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR176778 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR9786604 | Other | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180345 | Other | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4815604 | Other | None | ERR363498 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR6865502 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786440 | Other | lineage4.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR323037 | Other | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR17832802 | HR-TB | lineage3 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR9117709 | Other | None | SRR3675247 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR9119502 | MDR-TB | lineage4.6.2.2 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR29097026 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None |
|---|
