Rv0668 - c.3249G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
88 Sensitive
2 RR-TB
24 HR-TB
1 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.9 | 103 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.5 | 2 |
| lineage1.2.1.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4 | 5 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.8 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage2.2.1 | 11 |
| M.canetti;lineage4.9 | 3 |
| lineage2.2.1.2 | 3 |
| lineage4.3.2.1 | 2 |
| La1.8.1 | 1 |
| 1 | |
| lineage4.8;lineage4.9 | 2 |
| La1.7;lineage4.9 | 8 |
| La1;lineage4.9 | 2 |
| lineage4.7 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La1.7 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.4.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3 | 6 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.2 | 2 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 185 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR7240033 | Other | La1.8.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR369162 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR6358979 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4798099 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR400529 | Other | lineage3 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR9786076 | Sensitive | lineage3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR3675387 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR363502 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4819241 | Other | lineage4.9 | None | SRR29055611 | Sensitive | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675292 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR29097004 | Other | lineage3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR13266684 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4817998 | Other | lineage3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369160 | Sensitive | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None |
|---|
