Rv1630 - c.798C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
58 Sensitive
5 RR-TB
10 HR-TB
10 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4 | 4 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9 | 61 |
| lineage3 | 3 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.2.1.1 | 1 |
| lineage2.2.1 | 4 |
| lineage4.8 | 16 |
| La3;lineage4.9 | 8 |
| M.canetti;lineage4.2 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| La3;lineage4 | 1 |
| lineage4.2.1;lineage4.8 | 1 |
| lineage1.1.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.3.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage4.7 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| lineage5.1.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.3 | 2 |
| lineage1.2.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 135 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR3675265 | Other | lineage4 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | SRR6045371 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5153842 | Other | lineage4.8 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR14782513 | Other | lineage4.8 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR14781857 | Other | lineage4.8 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR28119823 | Sensitive | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR14802043 | Pre-XDR-TB | lineage4.2.1;lineage4.8 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR23310835 | Other | lineage4.8 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR5153867 | Other | lineage4.8 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR14782327 | Other | lineage4.8 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR6046802 | Other | lineage4.9 | None | SRR25827330 | MDR-TB | lineage4.8 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR4817998 | Other | lineage3 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR14802047 | Other | lineage4.8 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR373947 | Other | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR4820112 | Sensitive | lineage4.1.1.1 | None | ERR369162 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR10380084 | Other | lineage4.8 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR10380189 | Other | lineage4.8 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR14782549 | Other | lineage4.8 | None | ERR751326 | Other | lineage4.9 | None | SRR14782293 | Other | lineage4.8 | None | SRR29051354 | Other | lineage4.3.4.1 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR5153869 | Other | lineage4.8 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR28119843 | Sensitive | lineage4.9 | None | SRR14802000 | Other | lineage4.8 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR5153868 | Other | lineage4.8 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR3675502 | Sensitive | lineage4.9 | None | SRR14782782 | Other | lineage4.8 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR29051043 | Other | lineage4.3.3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR29772570 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None |
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