Rv0006 - c.1645T>C
Drug resistance types
48 Sensitive
0 RR-TB
25 HR-TB
5 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 48 |
| lineage2.2.1 | 8 |
| lineage3.1.3 | 1 |
| lineage4.3.3 | 1 |
| lineage1.1.2 | 1 |
| 3 | |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.1.1.3 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage4.1;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.5 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.7;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1;lineage4.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.2.1 | 2 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.4.1.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 118 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12416840 | MDR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR28044785 | Sensitive | lineage1.1.2 | None | ERR212001 | HR-TB | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR369151 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR2514692 | Other | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675248 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2517475 | Other | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675522 | Other | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR6045526 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR16156817 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None |
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