Rv3596c - c.1053G>C
Drug resistance types
74 Sensitive
4 RR-TB
54 HR-TB
8 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 134 |
| lineage4.3.4.2 | 1 |
| lineage4.3.3 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4.8 | 2 |
| lineage6.1.3 | 2 |
| La3;lineage4.9 | 8 |
| lineage4.1.2.1 | 5 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2 | 4 |
| lineage2.2.1.1 | 2 |
| lineage3 | 4 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1 | 14 |
| lineage4.6.2.2 | 2 |
| lineage4.5 | 1 |
| lineage2.2.1.2 | 2 |
| 1 | |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage1.1.2 | 3 |
| lineage5.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| La1.2.BCG | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La3;lineage4 | 1 |
| lineage4 | 1 |
| La1.8.1 | 3 |
| lineage1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 223 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5535933 | Other | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR14782054 | Other | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341467 | Other | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR9786597 | Other | lineage4.6.2.2 | None | ERR752229 | Other | lineage4.5 | None | ERR3797029 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4821143 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR369151 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6046210 | Other | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4769552 | Sensitive | La1.3 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4769452 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR5341387 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR3283028 | Other | La3;lineage4 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | ERR9896144 | Other | lineage3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323037 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR3797073 | Other | La1.8.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR28351442 | HR-TB | lineage3.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR137286 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR28351584 | HR-TB | lineage2.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None |
|---|
