SRR3675247
|
Other
|
lineage4.9
|
None
|
SRR1180446
|
Other
|
lineage4.9
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR6197021
|
MDR-TB
|
lineage4.3.4.2;lineage4.7
|
None
|
ERR4820075
|
Other
|
lineage4.1.2.1
|
None
|
ERR3275615
|
Sensitive
|
lineage4.4.1.1
|
nl
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
SRR6044819
|
Sensitive
|
lineage4.9
|
None
|
ERR8975044
|
Other
|
lineage4.1.1.2
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
ERR349266
|
Sensitive
|
lineage4.9
|
None
|
SRR1792022
|
Other
|
La1.8.1
|
None
|
ERR373946
|
Sensitive
|
lineage4.9
|
None
|
ERR4821488
|
Sensitive
|
lineage4.1.3
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
ERR363456
|
Sensitive
|
lineage4.9
|
None
|
ERR2229148
|
Other
|
lineage4.8
|
dk
|
ERR369159
|
Sensitive
|
lineage4.9
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
SRR11342646
|
HR-TB
|
lineage3
|
None
|
ERR2517475
|
Other
|
lineage4
|
None
|
ERR349264
|
Sensitive
|
lineage4.9
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
ERR349330
|
Sensitive
|
lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
SRR19295647
|
Sensitive
|
lineage4.9
|
None
|
SRR2100067
|
Other
|
lineage4.3.3
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
ERR2513405
|
Other
|
lineage2.2.1
|
None
|
SRR1175474
|
Other
|
lineage4.9
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
ERR363500
|
Sensitive
|
lineage4.9
|
None
|
ERR3283042
|
Other
|
lineage4.9
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
ERR2513724
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR363453
|
Sensitive
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
ERR4798431
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
ERR4817998
|
Other
|
lineage3
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
ERR369163
|
Sensitive
|
lineage4.9
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
SRR3675580
|
Sensitive
|
lineage4.9
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
ERR6197023
|
MDR-TB
|
lineage4.3.4.2;lineage4.7
|
None
|
ERR9119733
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342669
|
Other
|
lineage4.8
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
ERR7801175
|
HR-TB
|
lineage4.6.5
|
None
|
ERR4821276
|
Sensitive
|
lineage3
|
None
|
ERR7801176
|
RR-TB
|
lineage4.6.5
|
None
|
ERR4821686
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
ERR9786523
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR3797061
|
Other
|
La1.6;La3;lineage4.9
|
None
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10869071
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
ERR4830353
|
Other
|
La1.7
|
None
|
SRR3675514
|
Sensitive
|
lineage4.9
|
None
|
ERR349265
|
Other
|
lineage4.9
|
None
|
ERR373945
|
Sensitive
|
lineage4.9
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
ERR363426
|
Sensitive
|
lineage4.9
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
ERR4819706
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4816967
|
Other
|
lineage5
|
None
|
ERR363449
|
Sensitive
|
lineage4.9
|
None
|
ERR3468613
|
Other
|
La1.8.1
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR4797588
|
MDR-TB
|
lineage3
|
None
|
ERR4831756
|
MDR-TB
|
lineage2.2.2
|
vn
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
SRR6046245
|
Other
|
lineage4.9
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5341323
|
Sensitive
|
lineage4.9
|
None
|
SRR6045371
|
Other
|
lineage4.9
|
None
|
ERR2446382
|
Other
|
lineage4
|
None
|
SRR3675260
|
Sensitive
|
lineage4.9
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
ERR363509
|
Sensitive
|
lineage4.9
|
None
|
ERR2693230
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR4816904
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR6046564
|
Sensitive
|
lineage4.9
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
SRR3675541
|
Sensitive
|
lineage4.9
|
None
|
ERR5311077
|
Other
|
La1.8.1
|
None
|
SRR3675387
|
Other
|
lineage4.9
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
ERR9786711
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
SRR3675229
|
Sensitive
|
lineage4.9
|
None
|
ERR363445
|
Other
|
lineage4.9
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
SRR6045706
|
Sensitive
|
lineage4.9
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR9786164
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR3675234
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
SRR5341396
|
Other
|
lineage3;lineage4.9
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
ERR11465361
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR1792011
|
Other
|
La1.8.1
|
None
|
ERR349296
|
Sensitive
|
lineage4.9
|
None
|
SRR6045233
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR2513283
|
Sensitive
|
lineage5.1.4
|
None
|
ERR3324368
|
RR-TB
|
lineage1.1.2;lineage6.2.3
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6046196
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5341365
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR12634609
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR038289
|
Other
|
lineage4.3.3
|
None
|
SRR12708396
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR1175507
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR10796627
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR2512770
|
Sensitive
|
lineage4.2.1
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
ERR10762275
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR3675222
|
Other
|
La1.7
|
None
|
ERR4816113
|
Sensitive
|
lineage4.1.1.1
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|
SRR3675270
|
Other
|
lineage4.9
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
ERR3283024
|
Other
|
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9
|
None
|
SRR7070223
|
HR-TB
|
lineage3
|
None
|
ERR2693257
|
Other
|
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9
|
None
|
ERR3797044
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR369158
|
Other
|
lineage4.9
|
None
|
ERR4829816
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR12708384
|
Sensitive
|
lineage4.9
|
None
|
ERR3797017
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
SRR5341296
|
Sensitive
|
lineage4.9
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
ERR4178309
|
Other
|
lineage4.1.2.1
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR363506
|
Sensitive
|
lineage4.9
|
None
|
SRR3675455
|
Sensitive
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR9029360
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR363421
|
Sensitive
|
lineage4.9
|
None
|
ERR369161
|
Sensitive
|
lineage4.9
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
ERR736839
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR2693254
|
Other
|
La1.6;La3;lineage4.9
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
SRR12708374
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
SRR12708398
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR4769433
|
RR-TB
|
lineage4.9
|
None
|
SRR13423649
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6865502
|
Sensitive
|
lineage4
|
None
|
SRR6046897
|
Sensitive
|
lineage4.9
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR2512606
|
HR-TB
|
lineage3
|
None
|
SRR12708370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4814396
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR6865513
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675209
|
Sensitive
|
lineage4.9
|
None
|
ERR349299
|
Other
|
lineage4.9
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
SRR5818586
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR5987263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
ERR4829039
|
RR-TB
|
lineage4.3.1
|
None
|
SRR7535086
|
Other
|
|
None
|
ERR2446154
|
Sensitive
|
lineage4.4.1.1
|
nl
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
ERR369160
|
Sensitive
|
lineage4.9
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
ERR363502
|
Other
|
lineage4.9
|
None
|
SRR5341437
|
Sensitive
|
lineage4.9
|
None
|
SRR7070571
|
Sensitive
|
lineage3
|
None
|
SRR3675441
|
Other
|
lineage4.9
|
None
|
SRR6045050
|
Sensitive
|
lineage4.3.2.1
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
ERR363447
|
Other
|
lineage4.9
|
None
|
ERR373947
|
Other
|
lineage4.9
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR369157
|
Sensitive
|
lineage4.9
|
None
|
ERR2509886
|
Other
|
lineage3
|
None
|
ERR3797014
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR14066533
|
Sensitive
|
lineage1.1.1
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
ERR10762297
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR369156
|
Sensitive
|
lineage4.9
|
None
|
ERR4769418
|
Other
|
La1.2
|
None
|
SRR1175491
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR363446
|
Sensitive
|
lineage4.9
|
None
|
ERR3801503
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR18002887
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR3675477
|
Sensitive
|
lineage4.9
|
None
|
SRR6046385
|
Sensitive
|
lineage4.9
|
None
|
SRR6045503
|
Sensitive
|
lineage4.9
|
None
|
ERR4817915
|
Other
|
lineage4.9
|
None
|
ERR4797350
|
Sensitive
|
lineage1;lineage4.9
|
None
|
SRR1175472
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR29055611
|
Sensitive
|
lineage4.9
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
ERR752229
|
Other
|
lineage4.5
|
None
|
ERR369162
|
Other
|
lineage4.9
|
None
|
ERR4811030
|
Sensitive
|
lineage4.9
|
None
|
SRR6046611
|
Sensitive
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR4811031
|
Sensitive
|
lineage4.5
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
ERR4816610
|
Other
|
lineage4.3.3
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4818624
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR3275450
|
Other
|
lineage4
|
None
|
ERR369151
|
Other
|
lineage4.9
|
None
|
ERR363498
|
Sensitive
|
lineage4.9
|
None
|
SRR3675522
|
Other
|
lineage4.9
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
ERR10796628
|
Other
|
lineage4.3.3
|
None
|
ERR2693245
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR2513508
|
Sensitive
|
lineage3
|
gb
|
SRR3675292
|
Sensitive
|
lineage4.9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR2693231
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.9
|
None
|
ERR363490
|
Sensitive
|
lineage4.9
|
None
|
SRR17658565
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4815709
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR2229234
|
Sensitive
|
lineage4.8
|
None
|
ERR4799547
|
HR-TB
|
lineage2.2.1
|
None
|
ERR349300
|
Sensitive
|
lineage4.9
|
None
|
ERR363479
|
Sensitive
|
lineage4.9
|
None
|
SRR3675473
|
Sensitive
|
lineage4.9
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
SRR7131147
|
Other
|
lineage4.1.2.1
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
ERR2510831
|
Other
|
lineage4.3.3
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
ERR11465802
|
Other
|
La1.7;lineage4.3.4.1
|
None
|
ERR4816548
|
HR-TB
|
lineage4.5
|
None
|
ERR363474
|
Sensitive
|
lineage4.9
|
None
|
ERR4178226
|
Sensitive
|
lineage4
|
None
|
ERR4821811
|
Sensitive
|
lineage4.9
|
None
|
SRR1175508
|
Sensitive
|
lineage4.9
|
None
|
ERR3283020
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797043
|
Sensitive
|
lineage4.9
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR363499
|
Sensitive
|
lineage4.9
|
None
|
ERR4815909
|
Other
|
lineage4.8
|
None
|