Rv3596c - c.900C>T
Drug resistance types
52 Sensitive
17 RR-TB
13 HR-TB
36 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
62 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 85 |
| lineage4.9 | 60 |
| M.canetti;lineage4.9 | 1 |
| lineage4.8 | 3 |
| La1.4 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage4.3.2.1 | 2 |
| lineage4.3 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.1;lineage4.9 | 3 |
| lineage4 | 4 |
| lineage4.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage5.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage6.1.2 | 1 |
| 2 | |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 188 |
Geographic prevalence
Country level data for this variant is available for 16 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15315754 | MDR-TB | lineage2.2.1 | None | SRR12142350 | MDR-TB | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | SRR21277025 | Sensitive | lineage2.2.1 | None | SRR21277795 | Sensitive | lineage2.2.1 | None | SRR21031690 | MDR-TB | lineage2.2.1 | None | ERR349264 | Other | lineage4.9 | None | SRR10040264 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR22873597 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277310 | Sensitive | lineage2.2.1 | None | SRR15723300 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR12142326 | MDR-TB | lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR15723276 | Other | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | SRR15723138 | Sensitive | lineage2.2.1 | None | SRR28409289 | Other | lineage2.2.1 | None | SRR27069371 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR349300 | Other | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR373945 | Other | lineage4.9 | None | SRR25207242 | MDR-TB | lineage2.2.1 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR12142325 | MDR-TB | lineage2.2.1 | None | SRR1710073 | Other | lineage2.2.1 | cn | ERR4810975 | MDR-TB | lineage2.2.1 | cn | SRR21277230 | Sensitive | lineage2.2.1 | None | SRR21277460 | Sensitive | lineage2.2.1 | None | ERR9030480 | RR-TB | lineage2.2.1 | None | SRR25206876 | MDR-TB | lineage2.2.1 | None | SRR15316385 | MDR-TB | lineage2.2.1 | None | SRR12420442 | MDR-TB | lineage2.2.1 | None | SRR10305832 | Sensitive | lineage2.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR4811572 | MDR-TB | lineage2.2.1 | cn | SRR25515304 | MDR-TB | lineage2.2.1 | None | ERR369163 | Other | lineage4.9 | None | SRR21277414 | Sensitive | lineage2.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR21690630 | Sensitive | lineage2.2.1 | None | ERR4828257 | Other | lineage2.2.1 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR27450282 | Other | lineage2.2.1 | None | SRR15723235 | Sensitive | lineage2.2.1 | None | SRR10040349 | MDR-TB | lineage2.2.1 | None | ERR349299 | Other | lineage4.9 | None | SRR15723021 | Other | lineage2.2.1 | None | SRR6045371 | Other | lineage4.9 | None | SRR10305779 | Sensitive | lineage2.2.1 | None | SRR15723213 | Other | lineage2.2.1 | None | SRR12420762 | HR-TB | lineage2.2.1 | None | SRR12420586 | Sensitive | lineage2.2.1 | None | SRR6152664 | Sensitive | lineage2.2.1 | ca | ERR502474 | RR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR9786440 | Other | lineage4.1 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363453 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR15723236 | HR-TB | lineage2.2.1 | None | SRR12142399 | HR-TB | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR21277404 | Sensitive | lineage2.2.1 | None | ERR363446 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR3276156 | Sensitive | lineage2.2.1 | nl | SRR6046385 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR1723491 | Sensitive | lineage2.2.1 | cn | ERR3276147 | Sensitive | lineage2.2.1 | nl | ERR369158 | Other | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR3675265 | Other | lineage4 | None | ERR4811074 | HR-TB | lineage2.2.1 | cn | SRR6046878 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR20969857 | MDR-TB | lineage2.2.1 | None | SRR1710103 | Sensitive | lineage2.2.1 | cn | SRR5065251 | Sensitive | lineage2.2.1 | vn | SRR8651649 | Pre-XDR-TB | lineage2.2.1 | cn | SRR15723018 | HR-TB | lineage2.2.1 | None | SRR12142329 | MDR-TB | lineage2.2.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR25207134 | MDR-TB | lineage2.2.1 | None | SRR12142367 | MDR-TB | lineage2.2.1 | None | SRR5073791 | Other | lineage2.2.1 | vn | SRR25515629 | MDR-TB | lineage2.2.1 | None | SRR16370422 | MDR-TB | lineage2.2.1 | None | SRR17703718 | HR-TB | lineage2.2.1 | None | ERR349265 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR15368734 | Sensitive | lineage2.2.1 | None | SRR15315716 | Sensitive | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | ERR363498 | Other | lineage4.9 | None | SRR671722 | MDR-TB | lineage2.2.1 | cn | SRR12142337 | Sensitive | lineage2.2.1 | None | SRR21689745 | Sensitive | lineage2.2.1 | None | SRR6045706 | Other | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR18910154 | Sensitive | lineage2.2.1 | None | SRR15723147 | Sensitive | lineage2.2.1 | None | SRR12420282 | Sensitive | lineage2.2.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR363490 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR11972301 | RR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR363447 | Other | lineage4.9 | None | SRR12142351 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | ERR400538 | RR-TB | lineage5.1.2 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | ERR363500 | Other | lineage4.9 | None | SRR12420729 | Sensitive | lineage2.2.1 | None | SRR21277518 | Sensitive | lineage2.2.1 | None | ERR363479 | Other | lineage4.9 | None | SRR6045503 | Other | lineage4.9 | None | SRR8651645 | Pre-XDR-TB | lineage2.2.1 | cn | ERR369159 | Other | lineage4.9 | None | SRR12420441 | MDR-TB | lineage2.2.1 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR27069370 | MDR-TB | lineage2.2.1 | None | SRR7535086 | Other | None | SRR27069450 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069441 | Pre-XDR-TB | lineage2.2.1 | None | ERR9787197 | Other | None | ERR6866807 | RR-TB | lineage4.9 | None | SRR12142362 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR363449 | Other | lineage4.9 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046046 | Other | lineage4.9 | None | SRR21277510 | Other | lineage2.2.1 | None | ERR363499 | Other | lineage4.9 | None | ERR363421 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR10040431 | MDR-TB | lineage2.2.1 | None | SRR22250243 | Other | lineage2.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR4810886 | Sensitive | lineage2.2.1 | cn | SRR10809188 | Sensitive | lineage2.2.1 | None | ERR2145511 | Sensitive | lineage1.1.2 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR21279431 | Sensitive | lineage2.2.1 | None | SRR21887756 | Pre-XDR-TB | lineage2.2.1 | None |
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