Rv3596c - c.900C>T
Drug resistance types
81 Sensitive
11 RR-TB
26 HR-TB
21 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
33 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 19 |
| lineage4.8 | 4 |
| 19 | |
| lineage4 | 44 |
| lineage4.3.2.1 | 3 |
| lineage4.2.1 | 1 |
| lineage2.2.1 | 64 |
| lineage1.1.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.3 | 1 |
| lineage2.2 | 1 |
| lineage2.2.2 | 2 |
| lineage5.1.2 | 1 |
| lineage4.1.2.1 | 5 |
| lineage3 | 5 |
| lineage4.9;La1.3 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.1 | 1 |
| lineage6 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.3.3 | 1 |
| La1.4 | 1 |
| lineage4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 181 |
Geographic prevalence
Country level data for this variant is available for 18 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819794 | Sensitive | lineage4.8 | None | SRR5341333 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045053 | Other | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046802 | Other | lineage4 | None | ERR4828257 | Other | lineage2.2.1 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6152664 | Sensitive | lineage2.2.1 | ca | SRR6046897 | Sensitive | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | SRR7535086 | Other | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR671722 | MDR-TB | lineage2.2.1 | cn | ERR3275941 | RR-TB | lineage4.3 | nl | SRR8651645 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1063839 | HR-TB | lineage2.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | DRR185024 | Other | lineage2.2.2 | None | SRR8651649 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1063857 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR387051 | HR-TB | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769521 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4798431 | HR-TB | None | ERR4811074 | HR-TB | lineage2.2.1 | cn | ERR4810975 | MDR-TB | lineage2.2.1 | cn | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4810886 | Sensitive | lineage2.2.1 | cn | ERR4811572 | MDR-TB | lineage2.2.1 | cn | ERR6336766 | Other | lineage1.2.1.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR9030480 | RR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736835 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | SRR10809188 | Sensitive | lineage2.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | ERR9787197 | Other | None | SRR10305779 | Sensitive | lineage2.2.1 | None | SRR10305832 | Sensitive | lineage2.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR12142326 | MDR-TB | lineage2.2.1 | None | SRR11972301 | RR-TB | lineage2.2.1 | None | SRR12142329 | MDR-TB | lineage2.2.1 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR12142325 | MDR-TB | lineage2.2.1 | None | SRR12142337 | Sensitive | lineage2.2.1 | None | SRR12142350 | MDR-TB | lineage2.2.1 | None | SRR12142399 | HR-TB | lineage2.2.1 | None | SRR12142367 | MDR-TB | lineage2.2.1 | None | SRR12142362 | MDR-TB | lineage2.2.1 | None | SRR12142351 | MDR-TB | lineage2.2.1 | None | SRR15723021 | Other | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR15315754 | MDR-TB | lineage2.2.1 | None | SRR15315716 | Sensitive | lineage2.2.1 | None | SRR15316385 | MDR-TB | lineage2.2.1 | None | SRR15368734 | Sensitive | lineage2.2.1 | None | SRR15723018 | HR-TB | lineage2.2.1 | None | SRR15723147 | Sensitive | lineage2.2.1 | None | SRR15723138 | Sensitive | lineage2.2.1 | None | SRR18910154 | Sensitive | lineage2.2.1 | None | SRR15723235 | Sensitive | lineage2.2.1 | None | SRR15723236 | HR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR17703718 | HR-TB | lineage2.2.1 | None | SRR15723213 | Other | lineage2.2.1 | None | SRR15723276 | Other | lineage2.2.1 | None | SRR15723300 | Other | lineage2.2.1 | None | SRR16370422 | MDR-TB | lineage2.2.1 | None | SRR1710073 | Other | lineage2.2.1 | cn | SRR1710084 | Sensitive | lineage2.2.1 | cn | SRR1710103 | Sensitive | lineage2.2.1 | cn | SRR21277460 | Sensitive | lineage2.2.1 | None | SRR21277025 | Sensitive | lineage2.2.1 | None | SRR21277310 | Sensitive | lineage2.2.1 | None | SRR21277404 | Sensitive | lineage2.2.1 | None | SRR20969857 | MDR-TB | lineage2.2.1 | None | SRR21277230 | Sensitive | lineage2.2.1 | None | SRR21277414 | Sensitive | lineage2.2.1 | None | SRR21279431 | Sensitive | lineage2.2.1 | None | SRR21277518 | Sensitive | lineage2.2.1 | None | SRR21277558 | Sensitive | lineage2.2.1 | None | SRR21277510 | Other | lineage2.2.1 | None | SRR21277795 | Sensitive | lineage2.2.1 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR21677870 | Sensitive | None | SRR21031690 | MDR-TB | lineage2.2.1 | None | SRR21887756 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815310 | Other | None | ERR3276156 | Sensitive | lineage2.2.1 | nl | SRR1723491 | Sensitive | lineage2.2.1 | cn | SRR3675270 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3276147 | Sensitive | lineage2.2.1 | nl | SRR3675265 | Other | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4815550 | Other | lineage4 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675456 | HR-TB | None | ERR2145511 | Sensitive | lineage1.1.2 | None | SRR3675555 | HR-TB | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR4033524 | Sensitive | lineage4.3.2.1 | None | ERR4817998 | Other | lineage3 | None | SRR5073791 | Other | lineage2.2.1 | vn | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514125 | Other | lineage3 | None | SRR5065251 | Sensitive | lineage2.2.1 | vn | ERR2513649 | Sensitive | lineage3 | gb | ERR2513724 | Sensitive | lineage4.3.2.1 | None |
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