Rv0006 - p.Ala90Ser
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
75 Sensitive
4 RR-TB
25 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 1 |
| lineage4.9 | 87 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1.2 | 2 |
| La1.8.1 | 2 |
| lineage4.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.1.2.1 | 2 |
| La3;lineage4.9 | 7 |
| lineage3;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage4 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3 | 1 |
| lineage2.2.1 | 9 |
| lineage4.2.1 | 1 |
| lineage2.2.1.1 | 3 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| 1 | |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage3.1.3 | 1 |
| lineage4 | 2 |
| lineage6.1.3 | 1 |
| lineage4.6.2.2 | 2 |
| La1;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 2 |
| La1;lineage2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 153 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR7240033 | Other | La1.8.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6044835 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR29097004 | Other | lineage3 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR1063896 | Sensitive | None | ERR369151 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR323037 | Other | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR1181349 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR736831 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR751326 | Other | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675246 | Other | lineage4.9 | None |
|---|
