Rv0668 - c.1179G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
71 Sensitive
19 RR-TB
44 HR-TB
19 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
118 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 114 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| 13 | |
| lineage2.1;lineage4.9 | 4 |
| lineage4 | 5 |
| lineage1.1.2 | 1 |
| lineage2.2.1 | 21 |
| lineage4.1.2.1 | 5 |
| La1.7 | 2 |
| La1.8.1 | 4 |
| lineage3.1.2.1 | 2 |
| lineage4.3.4.2.1 | 6 |
| lineage3 | 13 |
| lineage4.1.2.1;lineage4.3.4.2.1 | 1 |
| La1.7;lineage4.9 | 10 |
| lineage4.8 | 6 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.3.2.1 | 4 |
| La2 | 1 |
| La1.6 | 1 |
| lineage2.2.1.2 | 1 |
| La3 | 2 |
| lineage2.2.1.1 | 4 |
| lineage3.1.3 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| La1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage1.1.1.1 | 1 |
| La1.7.1 | 1 |
| lineage2.1 | 1 |
| lineage1.1.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.3.3 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.5 | 1 |
| lineage3.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.6.1.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 277 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046611 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR1175074 | Other | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4819305 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR20969857 | MDR-TB | lineage2.2.1 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR7236233 | Other | La1.8.1 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4798898 | MDR-TB | lineage3.1.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4810741 | HR-TB | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR11465234 | Sensitive | lineage4.1.2.1;lineage4.3.4.2.1 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR4811075 | Other | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR5311077 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR363502 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR373947 | Other | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR29603691 | Sensitive | lineage3 | None | SRR1184294 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR1173633 | Other | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR6045832 | Other | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176651 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR400529 | Other | lineage3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769418 | Other | La1.2 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4820503 | Sensitive | lineage2.2.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811142 | RR-TB | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR323037 | Other | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR363445 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR6397389 | Sensitive | lineage4.1.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR29050928 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | SRR5341456 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR12015084 | Other | lineage4.8 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4821143 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1196677 | Other | lineage2.2 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR181887 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR2660498 | Sensitive | lineage4.3.4.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4972483 | Pre-XDR-TB | lineage4.1.2.1.1 | None | ERR752229 | Other | lineage4.5 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR4188213 | Other | La1.8.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR11466174 | Other | lineage4.8 | None | SRR6045371 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR28119777 | Other | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7236330 | Other | La1.8.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1173400 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1140716 | Other | lineage3 | None | SRR1173778 | Other | lineage4.9 | None | SRR22249687 | Sensitive | lineage4.8 | None | SRR3675222 | Other | La1.7 | None | ERR369162 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None |
|---|
