Rv3596c - c.762G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
115 Sensitive
13 RR-TB
29 HR-TB
19 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
59 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 143 |
| lineage2.2.2 | 4 |
| lineage4.3.4.2.1 | 1 |
| 4 | |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.8 | 3 |
| lineage4.1.2.1 | 5 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.4.1.1 | 1 |
| lineage1.1.1 | 2 |
| lineage3 | 7 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 17 |
| lineage6.1.1 | 2 |
| lineage4.4.2 | 1 |
| La1.8.1 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage3.1.3 | 1 |
| lineage4.5 | 1 |
| lineage4 | 3 |
| La2;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| La2 | 1 |
| La1.4 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.3.3 | 3 |
| lineage1.1.1;lineage4 | 1 |
| La1.2.BCG | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage1.1;lineage4.1.3 | 1 |
| lineage4.2.1 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage5.1.4 | 1 |
| lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 245 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6044875 | Sensitive | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR3675318 | Other | lineage4.9 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR3468488 | Other | La1.8.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR29096150 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11462861 | Other | La1.8.1 | None | ERR926163 | Other | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR13888750 | Other | La2 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR4817998 | Other | lineage3 | None | ERR926164 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR363447 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR4817069 | RR-TB | None | ERR4818536 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816100 | Sensitive | lineage1.1;lineage4.1.3 | None | ERR4178226 | Sensitive | lineage4 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR2514552 | Sensitive | lineage3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR29097026 | Other | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR12708416 | Sensitive | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR736831 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR6044952 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None |
|---|
