Rv0006 - c.-212C>T
Drug resistance types
62 Sensitive
2 RR-TB
34 HR-TB
21 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
103 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 4 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.7 | 1 |
| La3;lineage1.1.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9 | 75 |
| lineage2.1;lineage4.9 | 11 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.9;lineage9 | 2 |
| 14 | |
| La1.7;lineage4.9 | 2 |
| lineage4.1.2.1 | 11 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1 | 10 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2 | 1 |
| lineage4.6.2.2 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 7 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La3;lineage2 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.3 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage3 | 3 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| lineage4.3.2.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.8 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;lineage2.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage1.2.2.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 226 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675265 | Other | lineage4 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2027263 | Other | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6789626 | Other | None | ERR4178226 | Sensitive | lineage4 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR400326 | Other | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675236 | Other | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR3675387 | Other | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675311 | Other | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR4814480 | HR-TB | lineage4.1.2.1 | gb | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675221 | Other | lineage4.9 | None | ERR9787197 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4816999 | Other | None | SRR11662694 | Other | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR6046245 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR4800341 | Other | lineage3 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR363502 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR373947 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR12006550 | Sensitive | lineage1.2.1.2 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR369158 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR3675522 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR9117709 | Other | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR363447 | Other | lineage4.9 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12708416 | Sensitive | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR3797070 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR234659 | Other | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None |
|---|
