Rv0668 - c.339G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
70 Sensitive
4 RR-TB
22 HR-TB
8 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
44 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4 | 1 |
| lineage4.9 | 88 |
| lineage3 | 3 |
| lineage2.2.1 | 10 |
| La1.2.BCG | 2 |
| lineage4.3.2.1 | 4 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.2 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4 | 4 |
| lineage4.3.4 | 2 |
| lineage4.2.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.8 | 1 |
| lineage1.2.2.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.8.1 | 1 |
| lineage3;lineage4 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.3.3 | 1 |
| lineage4.7 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 152 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16627752 | RR-TB | lineage4.4 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1915485 | Other | La1.2.BCG | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR349296 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046839 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR736848 | Other | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR161037 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR6045371 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR373947 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341456 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR176651 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR212123 | Other | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None |
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