EBG00000313339 - n.175C>T
Drug resistance types
156 Sensitive
27 RR-TB
54 HR-TB
28 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
96 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 106 |
| lineage4.8 | 11 |
| lineage4.1 | 3 |
| lineage4 | 70 |
| lineage4.1.1 | 5 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.3.2.1 | 3 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.4.2.1 | 8 |
| lineage2.2.1 | 26 |
| 28 | |
| lineage4.1.3 | 1 |
| lineage2.1 | 2 |
| lineage3 | 20 |
| lineage4.5 | 2 |
| lineage4.3.3 | 5 |
| lineage4.1.2.1 | 21 |
| lineage4.6.1.2 | 5 |
| lineage1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.1.2 | 3 |
| lineage3.1.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage5.1.4 | 1 |
| lineage4.2.1 | 3 |
| lineage4.6 | 1 |
| lineage4.8.2 | 1 |
| lineage5.1.2 | 1 |
| lineage1.1.3.1 | 2 |
| La3 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.4 | 1 |
| lineage4.3.1.1 | 1 |
| lineage4.2.2 | 1 |
| lineage5.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.8.1 | 1 |
| La1.8.1 | 4 |
| La1.3 | 8 |
| lineage4.9;La1.3 | 2 |
| lineage2.2.1.2 | 1 |
| lineage2.2 | 2 |
| lineage6 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| La1.7.1 | 1 |
| lineage4.2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 376 |
Geographic prevalence
Country level data for this variant is available for 26 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675472 | Sensitive | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | ERR11081257 | Other | lineage4.8 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675477 | Other | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4814623 | Other | lineage4.8 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR1750926 | Other | lineage4.3.2.1 | za | ERR3275450 | Other | lineage4 | None | SRR3675229 | Other | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR1750909 | RR-TB | lineage4.1.1.2 | None | SRR3675249 | Sensitive | lineage4.9 | None | ERR1750939 | Sensitive | lineage2.2.1.1 | za | SRR3675265 | Other | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR3675318 | Other | lineage4.9 | None | SRR3675279 | Other | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR4816291 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817060 | RR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816470 | Other | lineage3 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR216965 | HR-TB | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816711 | Sensitive | lineage4.1.1 | gb | ERR216978 | Sensitive | lineage4.3.4.2.1 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR228175 | Sensitive | lineage3 | None | ERR4818988 | Other | lineage1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR228180 | Sensitive | lineage3 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR4818023 | Other | lineage4.1.2 | gb | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR4818873 | Other | lineage4.1.2 | gb | ERR4818904 | Other | lineage4.8 | None | ERR4818897 | Other | lineage4.1.2.1 | gb | ERR2513259 | Other | lineage3 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR2512770 | Other | lineage4.2.1 | None | SRR5007186 | Other | lineage4.6 | None | ERR2512821 | MDR-TB | lineage3 | gb | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341396 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819379 | Sensitive | lineage4.1.2.1 | gb | ERR4819383 | RR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2514112 | Sensitive | lineage4.8.2 | gb | ERR2514205 | Sensitive | lineage5.1.2 | gb | SRR5341432 | HR-TB | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4820503 | Other | lineage2.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR4819952 | Sensitive | La3 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | SRR5341323 | Sensitive | lineage4 | None | ERR4820030 | Other | lineage4.9 | None | ERR4821796 | Other | lineage4.1.1 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | SRR6045480 | Other | lineage4.1.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045503 | HR-TB | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6045892 | Sensitive | None | ERR4821573 | HR-TB | lineage1.2.1.2.1 | gb | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821727 | Other | lineage4.4 | gb | ERR2693227 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045936 | Sensitive | lineage4.8 | gb | SRR6045010 | Other | lineage4 | None | SRR6045033 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | ERR4829068 | MDR-TB | lineage2.2.1 | ng | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | ERR4829165 | Sensitive | lineage4.9 | ng | ERR4829874 | Sensitive | lineage4.1.2.1 | it | SRR6046482 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046659 | Pre-XDR-TB | lineage2.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4832052 | HR-TB | lineage2.1 | vn | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR4831815 | HR-TB | lineage2.2.1 | vn | ERR4831638 | Sensitive | None | ERR4831839 | MDR-TB | lineage2.2.1 | None | ERR4831851 | HR-TB | lineage2.2.1 | vn | SRR6785315 | Sensitive | lineage4.3.3 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR4831848 | HR-TB | lineage4.2.2 | vn | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR502532 | HR-TB | None | ERR502943 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9613540 | Sensitive | lineage4.6.2.2 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR028362 | Sensitive | None | ERR017781 | Other | lineage3 | None | ERR019855 | Other | lineage3 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR114423 | HR-TB | lineage3 | None | ERR3283025 | HR-TB | None | ERR1213935 | Other | lineage4.1.2.1 | pe | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3439441 | Other | La1.8.1 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797086 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4769406 | Other | lineage4.9 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4188121 | Other | La1.8.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769512 | Sensitive | lineage4.9 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4769551 | Other | La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799992 | Sensitive | lineage3 | in | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4798855 | Sensitive | lineage3 | in | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4812155 | Sensitive | None | ERR4811030 | Sensitive | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR6866410 | Sensitive | None | ERR702406 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787336 | Other | lineage6 | None | ERR9786671 | Other | None | ERR9786705 | Sensitive | lineage4.1.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787197 | Other | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1049672 | Other | lineage3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1173770 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR20632814 | Sensitive | lineage4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR2100272 | HR-TB | lineage3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2100537 | Sensitive | lineage3 | None | SRR2100532 | Sensitive | lineage3 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576654 | RR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None |
|---|
