Rv3596c - c.972G>C


Drug resistance types
141 Sensitive 22 RR-TB 84 HR-TB 21 MDR-TB 16 Pre-XDR-TB 0 XDR-TB 88 Other
lineage Counts
lineage Count
lineage4.9;lineage4.8.1;lineage4.1.1 1
52
lineage4.9 89
lineage4 107
lineage1.2.1.1 1
lineage2.1 1
lineage3 14
lineage3.1 1
lineage4.1.1 1
lineage4.1.2.1 10
lineage4.1.1.2 1
lineage3.1.3 2
lineage4.1 2
lineage1.1.2 4
lineage4.8 5
lineage2.2.1 30
lineage4.3 1
lineage4.3.4.2.1 4
lineage4.1.1.3.1 1
lineage4.3.2.1 3
lineage4.3.3 3
lineage4.6.2.2 1
lineage4.9;lineage2.1 1
lineage4.2.1 3
lineage2.2 6
lineage2.2.1.1 2
La2 1
lineage4.1.2 2
lineage4.8.1 1
lineage4.4.1.2 1
lineage4.3.4.1 1
lineage4;lineage3.1 1
lineage6.1.1 2
lineage5.1.2 1
La1.2 1
lineage3.1.2 1
lineage4.3.4.2 1
lineage4.6.5 2
lineage1.1.3.1 1
lineage6.1.3 1
lineage3.1.2.2;lineage3.1.2.1 1
La1.6 1
lineage4.4.1.1.1 2
lineage4.9;lineage2.2 1
lineage2 1
lineage3.1.1 1
La1.8.1 1
lineage4.9;lineage4.6.3 1
spoligotype Counts
spoligotype Count
None 372
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
SRR3675488 HR-TB None
SRR3675222 Other None
SRR3675209 Sensitive lineage4.9 None
SRR3675292 Sensitive lineage4 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675246 Sensitive lineage4 None
ERR4815471 Other lineage4.9 None
ERR702405 Sensitive lineage2.1 None
SRR3675265 Other lineage4 None
ERR4816964 Other lineage4.9 None
ERR4815556 RR-TB lineage3 None
ERR176740 HR-TB None
SRR3675501 HR-TB None
ERR4816982 Other lineage4 None
ERR2027290 RR-TB lineage3.1 None
SRR3675527 RR-TB lineage4.9 None
ERR4816113 Sensitive lineage4.1.1 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR4817069 RR-TB None
SRR3675571 HR-TB None
ERR4817998 Other lineage3 None
ERR4818710 Sensitive lineage4.9 None
ERR4818252 Other lineage4.1.1.2 None
ERR2513121 Sensitive lineage3.1.3 None
ERR2446566 Other lineage4.1 None
ERR4818110 Sensitive lineage4.9 None
ERR245675 Sensitive lineage1.1.2 None
ERR4818086 Sensitive lineage4.8 None
ERR2513438 Sensitive lineage4.1.2.1 None
ERR4818811 Pre-XDR-TB lineage2.2.1 None
ERR4818536 Other lineage4.9 None
ERR2513229 MDR-TB lineage2.2.1 None
ERR3275941 RR-TB lineage4.3 nl
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4819051 Other lineage4 None
ERR4818607 Sensitive lineage4.9 None
SRR5007161 RR-TB lineage4.1.1.3.1 None
SRR5007168 RR-TB lineage4.9 None
ERR4818561 HR-TB lineage4 None
ERR3275709 HR-TB lineage3 nl
SRR5007204 Other lineage4.1.2.1 None
SRR5341366 Sensitive lineage4 None
ERR4818624 Other lineage4.3.4.2.1 None
SRR5341387 Other lineage4 None
SRR5341373 HR-TB lineage4 None
ERR2513724 Sensitive lineage4.3.2.1 None
SRR5153091 HR-TB lineage4.3.3 None
SRR5341461 Sensitive lineage4 None
SRR5341400 HR-TB lineage4 None
ERR4819357 Other lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5341432 HR-TB lineage4 None
ERR4819383 RR-TB lineage4.9 None
SRR5341425 Other lineage4 None
ERR4819462 Other lineage4 None
ERR4819546 HR-TB lineage3 None
SRR5341308 Sensitive lineage4 None
SRR5341293 HR-TB lineage4 None
SRR5341298 Sensitive lineage4 None
SRR5341300 Other lineage4 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR5341455 Sensitive lineage4 None
SRR5341299 Sensitive lineage4 None
SRR5341303 RR-TB lineage4 None
SRR5341313 HR-TB None
ERR4819933 Other lineage4.9 None
SRR5341315 Sensitive None
SRR5341330 HR-TB None
SRR5341310 Other lineage1.1.2 None
ERR4820030 Other lineage4.9 None
SRR5341319 Other lineage3 None
SRR5341470 HR-TB None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341456 Other None
SRR5341467 Other lineage4 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
SRR5341469 Other lineage4 None
ERR502511 Sensitive lineage4.9;lineage2.1 None
ERR4821172 RR-TB lineage4.9 None
SRR6045503 HR-TB None
ERR2660539 Other lineage4.9 None
SRR6045832 HR-TB lineage4.9 None
SRR6045795 HR-TB lineage2.2.1 None
ERR4821655 Sensitive lineage4 None
SRR6045664 Other lineage4.2.1 None
SRR6045706 Sensitive lineage4 None
SRR6046141 Other lineage4.9 None
SRR6045892 Sensitive None
SRR6044780 Other lineage4.9 None
SRR6044835 Sensitive lineage4 None
SRR6044838 Other lineage4.9 None
SRR6044875 HR-TB lineage4.9 None
SRR6044876 Sensitive lineage4 None
SRR6045010 Other lineage4 None
SRR6044952 RR-TB lineage4.9 None
SRR6045050 Sensitive lineage4.3.2.1 None
SRR6045371 Sensitive lineage4.2.1 None
SRR6046210 Other lineage4 None
SRR6045217 Other lineage4 None
ERR2851356 Sensitive lineage4.9 None
SRR6046299 HR-TB None
SRR6046385 Other lineage4.9 None
SRR6045399 Other None
SRR6046253 HR-TB lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
ERR4830353 Other None
SRR6046611 HR-TB lineage4.9 None
SRR6511621 HR-TB None
SRR6046802 Other lineage4 None
SRR6046863 Sensitive lineage1.1.2 None
SRR6046897 Sensitive lineage4 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR323037 HR-TB lineage4 None
ERR4831117 HR-TB None
ERR4831545 Pre-XDR-TB lineage2.2 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR485006 HR-TB lineage4.9 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR502510 Sensitive lineage4 None
ERR4831657 MDR-TB lineage2.2.1 None
SRR6789624 MDR-TB lineage4.1 None
ERR502524 HR-TB La2 None
ERR4831863 HR-TB lineage2.2.1.1 None
SRR6982246 Sensitive lineage4 None
SRR9970979 Sensitive lineage4.8 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9970980 Other lineage4.1.2 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971150 RR-TB lineage4.8.1 None
SRR9971112 Other lineage2.2.1 None
ERR323107 Other lineage4 None
ERR323039 HR-TB None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323053 HR-TB None
ERR323085 Sensitive lineage4 None
ERR017781 Other lineage3 None
ERR323066 Sensitive lineage4 None
ERR067712 HR-TB lineage4 None
ERR1023502 MDR-TB lineage2.2.1 None
ERR1023525 HR-TB lineage4 None
ERR1063896 Sensitive None
ERR1034634 HR-TB None
ERR1035122 Sensitive None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR1063883 Sensitive lineage4 None
ERR1063855 Other lineage4 None
ERR108471 HR-TB lineage4 None
ERR3283047 HR-TB None
ERR137286 Sensitive lineage4 None
ERR323115 Sensitive lineage4 None
ERR3283014 HR-TB None
ERR3283028 Other None
ERR3283031 HR-TB None
ERR3273109 MDR-TB lineage4 None
ERR3283033 Sensitive lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR3283040 HR-TB None
ERR3445504 HR-TB None
ERR3283057 HR-TB lineage4 None
ERR349264 Sensitive lineage4 None
ERR349299 Sensitive lineage4 None
ERR349265 Sensitive lineage4 None
ERR349298 Sensitive lineage4 None
ERR349266 Sensitive lineage4.9 None
ERR349296 Sensitive lineage4 None
ERR349300 Sensitive lineage4.9 None
ERR363426 Sensitive lineage4 None
ERR363421 Sensitive lineage4 None
ERR349330 Sensitive lineage4 None
ERR363445 Sensitive lineage4 None
ERR363437 Sensitive lineage4 None
ERR363446 Sensitive lineage4 None
ERR363449 Sensitive lineage4 None
ERR363447 Sensitive lineage4 None
ERR363509 Sensitive lineage4 None
ERR363453 Sensitive lineage4 None
ERR363474 Sensitive lineage4 None
ERR363499 Sensitive lineage4 None
ERR363500 Sensitive lineage4 None
ERR363502 Sensitive lineage4 None
ERR363456 Sensitive lineage4 None
ERR363479 Sensitive lineage4 None
ERR363498 Sensitive lineage4 None
ERR363490 Sensitive lineage4 None
ERR363506 Sensitive lineage4 None
ERR369158 Sensitive lineage4 None
ERR369156 Sensitive lineage4.9 None
ERR369151 Sensitive lineage4.9 None
ERR369157 Sensitive lineage4.9 None
ERR3797015 HR-TB None
ERR369159 Sensitive lineage4 None
ERR369162 Sensitive lineage4 None
ERR369163 Sensitive lineage4 None
ERR373945 HR-TB lineage4 None
ERR373946 Sensitive lineage4 None
ERR373947 Sensitive lineage4 None
ERR369160 Sensitive lineage4.9 None
ERR3797063 HR-TB None
ERR3797048 HR-TB None
ERR3797065 MDR-TB lineage4 None
ERR3797079 Sensitive lineage4 None
ERR3797080 HR-TB lineage4.9 None
ERR3797087 Sensitive lineage4 None
ERR3797064 Sensitive None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR3799304 Other lineage6.1.1 None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR400529 Other lineage3 None
ERR4024991 Other None
ERR405209 Sensitive lineage4 None
ERR400538 RR-TB lineage5.1.2 None
ERR4596902 HR-TB lineage3 None
ERR4178226 Sensitive lineage4 None
ERR4178309 Other lineage4.1.2.1 None
ERR4596910 Sensitive lineage4 None
ERR473303 Sensitive lineage4.9 None
ERR473323 HR-TB lineage4.9 None
ERR4769474 HR-TB lineage4 None
ERR4769433 Pre-XDR-TB lineage4.9 None
ERR4769442 HR-TB lineage4 None
ERR4769457 Other lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR4769497 HR-TB La1.2 None
ERR4796254 Sensitive lineage4 None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4796577 MDR-TB None
ERR4797193 HR-TB lineage1.1.2 None
ERR4796929 Sensitive lineage4 None
ERR4797184 Sensitive lineage4 None
ERR4797264 Sensitive None
ERR4797474 Other None
ERR4798431 HR-TB None
ERR4798099 Other None
ERR4798504 Other lineage3 None
ERR4799513 HR-TB lineage2.2 None
ERR4799025 Pre-XDR-TB None
ERR4799378 Sensitive lineage4 None
ERR4798648 HR-TB lineage3.1.2 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR6359066 HR-TB lineage4 None
ERR4811493 HR-TB None
ERR6358951 HR-TB lineage4 None
ERR6358979 Other None
ERR6359069 Other lineage4.9 None
ERR6359070 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR6865502 Sensitive lineage4 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6866022 Other None
ERR6865513 Other lineage4.1.2.1 None
ERR6866639 Other None
ERR6866547 Sensitive lineage4 None
ERR6866410 Sensitive None
ERR736837 Other lineage4.9 None
ERR736834 Sensitive lineage4 None
ERR736831 HR-TB lineage4.9 None
ERR9786592 Sensitive lineage4.3.4.2 None
ERR736865 HR-TB None
ERR7801175 RR-TB lineage4.6.5 None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR736856 HR-TB lineage4 None
ERR736872 Sensitive lineage4 None
ERR751326 Sensitive lineage4 None
ERR7801176 RR-TB lineage4.6.5 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9786076 Sensitive lineage3 None
SRR10315751 MDR-TB lineage4.8 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9787014 Other lineage6.1.1 None
ERR9787256 Other lineage6.1.3 None
ERR987722 HR-TB None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
SRR10315558 Sensitive lineage2.2.1 None
SRR10315567 Other lineage2.2.1 None
SRR1062919 HR-TB lineage2.2.1 None
SRR1049672 Other lineage3 None
SRR1049675 HR-TB lineage2.2.1 None
SRR1049674 HR-TB lineage2.2.1 None
SRR1049725 RR-TB lineage4.1.2.1 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1062871 MDR-TB lineage4.3.4.2.1 None
SRR1062928 RR-TB lineage4 None
SRR10808399 Sensitive lineage4 None
SRR10809074 Sensitive lineage4 None
SRR10808805 Sensitive None
SRR1173777 Other lineage4 None
SRR11349186 MDR-TB lineage4.3.3 None
SRR1158918 Sensitive lineage4 None
SRR1172885 HR-TB lineage4.9 None
SRR1173568 Other lineage4.9 None
SRR1173770 Other lineage4.9 None
SRR10993951 RR-TB La1.6 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR1140724 HR-TB lineage2.2.1 None
SRR1172310 HR-TB None
SRR1172717 Other lineage4.9 None
SRR1172807 Sensitive lineage4.9 None
SRR1173170 Other lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
SRR1174897 HR-TB None
SRR1175487 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180444 Sensitive lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1181214 Other lineage4.9 None
SRR1180996 HR-TB lineage4 None
SRR1181325 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181283 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181368 Other lineage4.9 None
SRR1181351 Sensitive lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR1181390 Sensitive lineage2 None
SRR1181402 Sensitive lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
SRR16157123 Other lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR14782405 HR-TB None
SRR16156775 Other lineage4.9 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR17658565 Other lineage3 None
SRR1791747 Other La1.8.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18002974 Pre-XDR-TB lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18913742 Sensitive lineage3.1.3 None
SRR19295647 Sensitive lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR19303820 RR-TB lineage4.8 None
SRR20632814 Sensitive lineage4 None
SRR20970016 Other lineage2.2 None
SRR20969708 HR-TB lineage2.2 None
SRR8692790 RR-TB lineage4 None
SRR8692800 Other lineage4 None
SRR8692893 Other lineage4.9 None
SRR8692905 HR-TB None
SRR8692782 Other lineage4.9 None
SRR8692907 Other lineage4.9 None
SRR8692871 Other lineage4.9 None
SRR26159047 Other lineage4.9;lineage4.6.3 None