Rv3596c - c.972G>C
Drug resistance types
140 Sensitive
22 RR-TB
84 HR-TB
21 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
87 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 107 |
| lineage2.2.1 | 30 |
| lineage3 | 14 |
| lineage4.9 | 89 |
| 52 | |
| lineage1.1.2 | 4 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.2.1 | 3 |
| lineage4.3.2.1 | 3 |
| lineage4.8 | 5 |
| lineage2.2 | 6 |
| lineage2.2.1.1 | 2 |
| lineage4.1 | 2 |
| La2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3 | 1 |
| lineage4.3.3 | 3 |
| lineage4.8.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage4.1.2.1 | 10 |
| lineage5.1.2 | 1 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.6.5 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.4.1.1.1 | 2 |
| La1.6 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| lineage3.1.1 | 1 |
| lineage3.1.3 | 2 |
| La1.8.1 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.6.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 370 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341303 | RR-TB | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341319 | Other | lineage3 | None | ERR4820030 | Other | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341456 | Other | None | SRR5341467 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341470 | HR-TB | None | SRR5341469 | Other | lineage4 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045503 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6044838 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6045399 | Other | None | ERR4830353 | Other | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | SRR6511621 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | ERR502510 | Sensitive | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323107 | Other | lineage4 | None | ERR323039 | HR-TB | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323053 | HR-TB | None | ERR017781 | Other | lineage3 | None | ERR323066 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1035122 | Sensitive | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR3283014 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3445504 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4024991 | Other | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400529 | Other | lineage3 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR405209 | Sensitive | lineage4 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798431 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736837 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR736872 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9786076 | Sensitive | lineage3 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1172717 | Other | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172310 | HR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14782405 | HR-TB | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR16156775 | Other | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR1791747 | Other | La1.8.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR8692871 | Other | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692905 | HR-TB | None | SRR8692907 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675488 | HR-TB | None | SRR3675222 | Other | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675265 | Other | lineage4 | None | SRR3675501 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816982 | Other | lineage4 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4817069 | RR-TB | None | SRR3675571 | HR-TB | None | ERR2446566 | Other | lineage4.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4818710 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818086 | Sensitive | lineage4.8 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819462 | Other | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None |
|---|
