Rv3596c - c.1224T>C


Drug resistance types
163 Sensitive 9 RR-TB 134 HR-TB 28 MDR-TB 13 Pre-XDR-TB 0 XDR-TB 141 Other
lineage Counts
lineage Count
lineage4 116
135
lineage2.2.1 30
lineage4.2.1 4
lineage4.9 88
lineage2.2.1.1 6
lineage2.1 4
lineage4.6.2.2 6
lineage5.2 2
lineage2.2 10
lineage4.2.1.1 1
lineage4.1.2 3
lineage4.8 2
lineage4.3.3 5
lineage4.3.2.1 3
lineage4.8.1 1
lineage4.4.2 1
lineage4.4.1.2 1
La1.8.1 2
lineage3 5
lineage4;lineage3.1 1
lineage5.1.2 1
lineage4.1.2.1 7
La1.2 4
lineage4.9;La1.3 1
La1.3 1
lineage1.1.2 4
lineage4.8;La3 2
lineage3.1.2.1 1
lineage4.5 2
lineage4.3.4 1
lineage4.6.5 2
lineage1.1.3.1 2
lineage4.8;lineage4.1 2
lineage6.3.1 1
lineage6.1.3 1
lineage6 1
lineage2.2.1.2 2
lineage4.9;lineage2.2 1
lineage4.4.1.1.1 1
lineage2 3
lineage3.1 2
lineage1.1.1 1
lineage4.1.1.3 2
lineage4.3.4.1 1
lineage7;lineage2.2.1.2 1
La1.7.1 1
lineage4.1 2
lineage4.1.1.1 1
lineage4.9;La3 1
lineage4.2;La1.7 1
lineage3;lineage2.2.1 1
lineage6.3;lineage2.2.1 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
lineage1.2.1.1 1
lineage4.3.4.2.1 1
lineage4.1.1 1
lineage4.1.1.2 1
lineage5.1.4 1
lineage4.9;lineage2.1 1
spoligotype Counts
spoligotype Count
None 488
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6046210 Other lineage4 None
SRR6045233 HR-TB None
SRR6046046 Other None
SRR6045264 Sensitive lineage2.2.1 None
SRR6046225 HR-TB None
SRR6045371 Sensitive lineage4.2.1 None
SRR6045399 Other None
SRR6045327 HR-TB None
SRR6046245 Other lineage4.9 None
SRR6046253 HR-TB lineage4.9 None
SRR6046362 HR-TB None
SRR6046460 HR-TB None
SRR6046385 Other lineage4.9 None
SRR6046397 Other None
ERR4830353 Other None
SRR6046824 HR-TB None
SRR6046482 HR-TB None
SRR6046802 Other lineage4 None
SRR6046492 Other None
SRR6046611 HR-TB lineage4.9 None
SRR6046644 HR-TB None
SRR6046897 Sensitive lineage4 None
SRR6046878 HR-TB lineage4 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6079962 HR-TB lineage2.2.1.1 None
SRR6511621 HR-TB None
ERR4831618 MDR-TB lineage2.1 None
ERR4872096 MDR-TB lineage4.6.2.2 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4872094 MDR-TB lineage5.2 None
ERR4831545 Pre-XDR-TB lineage2.2 None
ERR4831546 HR-TB lineage2.2 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR4831638 Sensitive None
ERR4831657 MDR-TB lineage2.2.1 None
ERR4831740 HR-TB lineage2.2.1 None
ERR502510 Sensitive lineage4 None
ERR294266 HR-TB None
SRR6832178 HR-TB lineage4.2.1.1 None
SRR6789628 HR-TB lineage4.9 None
SRR9970980 Other lineage4.1.2 None
ERR502943 HR-TB None
ERR502889 Other None
SRR9970979 Sensitive lineage4.8 None
SRR7535082 Sensitive lineage4 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9971114 Other lineage2.2.1 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR323045 HR-TB None
SRR9971112 Other lineage2.2.1 None
SRR9971150 RR-TB lineage4.8.1 None
ERR323048 Pre-XDR-TB lineage4.9 None
ERR323085 Sensitive lineage4 None
ERR323107 Other lineage4 None
DRR188519 Other lineage4.4.2 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323066 Sensitive lineage4 None
ERR067699 HR-TB lineage4 None
ERR067681 HR-TB None
ERR323108 HR-TB lineage4 None
ERR1035122 Sensitive None
ERR1063839 HR-TB lineage2.2 None
ERR1063858 HR-TB None
ERR1063857 HR-TB None
ERR1063862 HR-TB None
ERR1063859 HR-TB None
ERR1063896 Sensitive None
ERR1063883 Sensitive lineage4 None
ERR108471 HR-TB lineage4 None
ERR133825 Sensitive lineage4 None
ERR133986 HR-TB None
ERR3283024 Other None
ERR323115 Sensitive lineage4 None
ERR3273109 MDR-TB lineage4 None
ERR3283014 HR-TB None
ERR3283021 HR-TB None
ERR3283025 HR-TB None
ERR3283028 Other None
ERR137286 Sensitive lineage4 None
ERR3283031 HR-TB None
ERR3283030 HR-TB lineage4.9 None
ERR3283032 HR-TB None
ERR3283047 HR-TB None
ERR3283040 HR-TB None
ERR3439432 Other None
ERR3283057 HR-TB lineage4 None
ERR3445503 HR-TB None
ERR349266 Sensitive lineage4.9 None
ERR349265 Sensitive lineage4 None
ERR349264 Sensitive lineage4 None
ERR349330 Sensitive lineage4 None
ERR349298 Sensitive lineage4 None
ERR349296 Sensitive lineage4 None
ERR349299 Sensitive lineage4 None
ERR349300 Sensitive lineage4.9 None
ERR363421 Sensitive lineage4 None
ERR363426 Sensitive lineage4 None
ERR363437 Sensitive lineage4 None
ERR363447 Sensitive lineage4 None
ERR363446 Sensitive lineage4 None
ERR363445 Sensitive lineage4 None
ERR363474 Sensitive lineage4 None
ERR363449 Sensitive lineage4 None
ERR363456 Sensitive lineage4 None
ERR363453 Sensitive lineage4 None
ERR363490 Sensitive lineage4 None
ERR363499 Sensitive lineage4 None
ERR363479 Sensitive lineage4 None
ERR363498 Sensitive lineage4 None
ERR363502 Sensitive lineage4 None
ERR363500 Sensitive lineage4 None
ERR363509 Sensitive lineage4 None
ERR363506 Sensitive lineage4 None
ERR369159 Sensitive lineage4 None
ERR369158 Sensitive lineage4 None
ERR369160 Sensitive lineage4.9 None
ERR369162 Sensitive lineage4 None
ERR369163 Sensitive lineage4 None
ERR373946 Sensitive lineage4 None
ERR373945 HR-TB lineage4 None
ERR3797015 HR-TB None
ERR3797024 Other lineage4.9 None
ERR373947 Sensitive lineage4 None
ERR3797014 Other None
ERR3797044 Other None
ERR3797017 Other None
ERR3797043 HR-TB None
ERR3797047 HR-TB lineage4 None
ERR3797080 HR-TB lineage4.9 None
ERR3797048 HR-TB None
ERR3797061 Other None
ERR3797063 HR-TB None
ERR3797073 HR-TB La1.8.1 None
ERR3797079 Sensitive lineage4 None
ERR400320 Sensitive lineage4 None
ERR3797064 Sensitive None
ERR3797086 Other lineage4.9 None
ERR3797087 Sensitive lineage4 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR400336 Sensitive lineage4 None
ERR400326 Sensitive lineage4 None
ERR400529 Other lineage3 None
ERR400345 Other lineage4 None
ERR4178226 Sensitive lineage4 None
ERR403298 HR-TB lineage4 None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR400538 RR-TB lineage5.1.2 None
ERR4024991 Other None
ERR405209 Sensitive lineage4 None
ERR4178309 Other lineage4.1.2.1 None
ERR4407463 HR-TB None
ERR4769427 Other La1.2 None
ERR473323 HR-TB lineage4.9 None
ERR473332 Other lineage4 None
ERR4769444 HR-TB lineage4.9 None
ERR4769442 HR-TB lineage4 None
ERR4769446 Sensitive lineage4.9;La1.3 None
ERR4769457 Other lineage4.9 None
ERR4769497 HR-TB La1.2 None
ERR4769474 HR-TB lineage4 None
ERR4769514 Other La1.3 None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4769521 HR-TB None
ERR4796254 Sensitive lineage4 None
ERR4797264 Sensitive None
ERR4796929 Sensitive lineage4 None
ERR4797184 Sensitive lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797313 HR-TB None
ERR4797474 Other None
ERR4797350 Sensitive lineage4.9 None
ERR4798099 Other None
ERR4798431 HR-TB None
ERR4810741 HR-TB None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR12015083 Other lineage4.8;La3 None
ERR4810624 HR-TB lineage2.2 None
ERR4798406 HR-TB None
ERR4799378 Sensitive lineage4 None
ERR4800102 Sensitive lineage3.1.2.1 None
ERR4811030 Sensitive None
ERR4811022 HR-TB None
ERR4811031 Sensitive lineage4.5 None
ERR6358951 HR-TB lineage4 None
ERR4811142 MDR-TB None
ERR6198317 Other La1.2 None
ERR4811105 HR-TB None
ERR4812155 Sensitive None
ERR6866022 Other None
ERR6358979 Other None
ERR6359074 HR-TB lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
ERR6865502 Sensitive lineage4 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6866547 Sensitive lineage4 None
ERR6866410 Sensitive None
ERR6866639 Other None
ERR6866807 HR-TB lineage4 None
ERR702404 HR-TB None
ERR736874 HR-TB None
ERR736837 Other lineage4.9 None
ERR736835 HR-TB None
ERR736872 Sensitive lineage4 None
ERR736875 HR-TB lineage4 None
ERR736817 HR-TB lineage4.3.4 None
ERR736834 Sensitive lineage4 None
ERR736856 HR-TB lineage4 None
ERR751326 Sensitive lineage4 None
ERR7801175 RR-TB lineage4.6.5 None
ERR752229 Other lineage4.5 None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR7801176 RR-TB lineage4.6.5 None
ERR9117721 HR-TB lineage1.1.2 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9119502 MDR-TB lineage4.6.2.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786076 Sensitive lineage3 None
ERR9119669 HR-TB None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR9786843 Other None
ERR9896144 Other lineage3 None
ERR9787139 Other lineage6.3.1 None
ERR9787256 Other lineage6.1.3 None
ERR9787336 Other lineage6 None
SRR1172717 Other lineage4.9 None
SRR10808399 Sensitive lineage4 None
SRR10809074 Sensitive lineage4 None
SRR1158918 Sensitive lineage4 None
SRR1169194 Other None
SRR1172234 Other None
SRR10315567 Other lineage2.2.1 None
SRR10315751 MDR-TB lineage4.8 None
SRR10808668 Sensitive lineage2.2.1 None
SRR10808805 Sensitive None
SRR1172728 MDR-TB None
SRR1173118 Other None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172807 Sensitive lineage4.9 None
SRR1172817 HR-TB None
SRR1172857 MDR-TB None
SRR1172951 Other None
SRR1173706 Other lineage4.9 None
SRR1173153 HR-TB None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173363 HR-TB None
SRR1173384 Other lineage4 None
SRR1173400 Other None
SRR1173687 Pre-XDR-TB lineage2.2.1 None
SRR1173484 Other lineage4 None
SRR1173562 HR-TB lineage4 None
SRR1173633 HR-TB lineage4.9 None
SRR1173629 Other None
SRR1173788 Other None
SRR1173778 Other None
SRR1175508 Other lineage4.9 None
SRR1175074 MDR-TB None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1175500 MDR-TB lineage4 None
SRR1175507 MDR-TB lineage4 None
SRR1175049 RR-TB None
SRR1175496 HR-TB lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1180270 Other lineage2.2.1 None
SRR1180137 Other lineage2.2.1 None
SRR1180148 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR1180172 Other lineage2.2.1 None
SRR1180250 Other lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180413 Sensitive lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181283 Sensitive lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1181351 Sensitive lineage4.9 None
SRR1180996 HR-TB lineage4 None
SRR1181020 Other lineage2.2.1 None
SRR1181091 Other lineage2.2.1.1 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181390 Sensitive lineage2 None
SRR1181402 Sensitive lineage4.9 None
SRR1183049 Other lineage2.2 None
SRR1183106 Other lineage2.2.1.1 None
SRR1184294 HR-TB None
SRR1183144 Other lineage2.2.1 None
SRR1183965 Sensitive lineage4.9 None
SRR1184024 Other lineage2.2.1.1 None
SRR1183145 Other lineage2.2.1 None
SRR1184312 HR-TB lineage2.2.1 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184346 HR-TB lineage3.1 None
SRR1184372 MDR-TB None
SRR1196546 HR-TB None
SRR1196474 HR-TB lineage3.1 None
SRR1196494 MDR-TB None
SRR1184381 MDR-TB None
SRR1184380 HR-TB None
SRR1184388 Other None
SRR1196768 MDR-TB None
SRR1196566 HR-TB None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR1196677 HR-TB lineage2 None
SRR14066533 Sensitive lineage1.1.1 None
SRR12142341 HR-TB None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR12142339 HR-TB lineage2.2.1 None
SRR12416840 MDR-TB lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13837466 Other lineage4.9 None
SRR13837507 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR14801749 Sensitive None
SRR18549032 HR-TB lineage7;lineage2.2.1.2 None
SRR15368973 Other None
SRR16157123 Other lineage4.9 None
SRR1710057 Other lineage2.1 None
SRR1791747 Other La1.8.1 None
SRR1792478 HR-TB La1.7.1 None
SRR18003019 Other lineage2.2.1 None
SRR20969677 HR-TB lineage2 None
SRR19304036 HR-TB None
SRR18910194 HR-TB lineage2.2 None
SRR19295647 Sensitive lineage4.9 None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR20969731 Other lineage2.2.1 None
SRR20970016 Other lineage2.2 None
SRR20969708 HR-TB lineage2.2 None
SRR8692899 Other lineage4.9 None
SRR12708416 Sensitive lineage4.1 None
SRR25827682 Other None
SRR8692812 Other lineage4.9 None
SRR8692887 Other None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR26399973 Other lineage4.9;La3 None
SRR26159043 Other lineage4.9 None
SRR23961559 Other lineage4.2;La1.7 None
SRR23961549 Other La1.2 None
ERR158583 HR-TB None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR3675455 Sensitive lineage4 None
SRR3675473 Sensitive lineage4.9 None
SRR3675472 Sensitive lineage4.9 None
ERR176779 HR-TB None
SRR28119811 Other lineage6.3;lineage2.2.1 None
ERR176778 HR-TB None
SRR3675477 Other lineage4.9 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
ERR4814396 Sensitive lineage4.1.1.3 None
SRR3675229 Other lineage4 None
SRR3675488 HR-TB None
SRR3416776 Other lineage2.1 None
SRR3675210 Sensitive lineage4.9 None
SRR3675209 Sensitive lineage4.9 None
SRR3675222 Other None
SRR3675246 Sensitive lineage4 None
SRR3675234 Other None
ERR4814734 Other lineage1.2.1.1 None
ERR702405 Sensitive lineage2.1 None
SRR3675249 Sensitive lineage4.9 None
SRR3675266 Sensitive lineage4.9 None
ERR181824 HR-TB lineage4 None
SRR3675247 Other lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR3675279 Other None
SRR3675265 Other lineage4 None
SRR3675270 HR-TB None
ERR176651 HR-TB None
SRR3675283 Sensitive lineage4.9 None
SRR3675292 Sensitive lineage4 None
SRR3675318 Other lineage4.9 None
ERR181887 HR-TB None
SRR3675501 HR-TB None
SRR1723818 HR-TB lineage2.2.1 cn
SRR3675387 Sensitive None
SRR3675522 Other None
SRR3675503 Sensitive lineage4.9 None
SRR3675514 Sensitive lineage4.9 None
SRR3675527 RR-TB lineage4.9 None
SRR3675553 Sensitive lineage4.9 None
SRR3675537 Sensitive lineage4.9 None
SRR3675547 Other lineage4.9 None
ERR4816113 Sensitive lineage4.1.1 None
SRR3675542 Other lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR3675548 Sensitive lineage4.9 None
ERR212125 HR-TB lineage4 None
SRR3675550 Other None
ERR216965 HR-TB lineage4.9 None
SRR3675577 Sensitive lineage4.9 None
SRR3675574 HR-TB None
SRR3675571 HR-TB None
ERR212138 HR-TB lineage4 None
ERR4816904 Sensitive lineage4.1.2.1 None
SRR3742665 HR-TB None
ERR502912 Other lineage2.2.1 None
ERR4818252 Other lineage4.1.1.2 None
ERR4817896 HR-TB lineage2.2.1 None
ERR245675 Sensitive lineage1.1.2 None
ERR4817893 Other lineage4.8;La3 None
ERR2446566 Other lineage4.1 None
ERR4818347 Other lineage4.1.2 None
ERR2513283 Other lineage5.1.4 None
ERR4818536 Other lineage4.9 None
ERR4818394 Other lineage4.9 None
ERR2512770 Other lineage4.2.1 None
SRR5153091 HR-TB lineage4.3.3 None
SRR5341373 HR-TB lineage4 None
ERR2513724 Sensitive lineage4.3.2.1 None
ERR2512849 RR-TB lineage1.1.3.1 None
SRR5341366 Sensitive lineage4 None
SRR5341387 Other lineage4 None
SRR5341461 Sensitive lineage4 None
SRR5341396 Other lineage4 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5341400 HR-TB lineage4 None
SRR5341437 Sensitive lineage4.9 None
SRR5341418 Other None
SRR5341432 HR-TB lineage4 None
SRR5341425 Other lineage4 None
ERR4819462 Other lineage4 None
ERR2514552 Sensitive lineage3 None
SRR5341299 Sensitive lineage4 None
SRR5341293 HR-TB lineage4 None
SRR5341296 Sensitive lineage4.9 None
SRR5341298 Sensitive lineage4 None
SRR5341300 Other lineage4 None
ERR2514692 Other None
ERR1023509 Other None
SRR5341303 RR-TB lineage4 None
SRR5341302 HR-TB None
SRR5341308 Sensitive lineage4 None
SRR5341310 Other lineage1.1.2 None
SRR5341313 HR-TB None
SRR5341315 Sensitive None
ERR2446382 Other lineage4 None
SRR5341467 Other lineage4 None
SRR5341323 Sensitive lineage4 None
ERR4820043 Sensitive lineage4.1.2.1 None
ERR2693232 Other lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR2693231 Other None
ERR2517475 Other lineage4 None
SRR5341469 Other lineage4 None
ERR2693230 Other None
ERR502511 Sensitive lineage4.9;lineage2.1 None
SRR6045450 Other lineage4.9 None
SRR6045526 HR-TB None
ERR2693254 Other None
ERR2693257 Other None
SRR6045503 HR-TB None
SRR6044819 Sensitive lineage4.9 None
SRR6045519 HR-TB None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR6045664 Other lineage4.2.1 None
SRR6045892 Sensitive None
SRR5535933 HR-TB None
ERR2660539 Other lineage4.9 None
ERR4821655 Sensitive lineage4 None
SRR6045706 Sensitive lineage4 None
SRR6045795 HR-TB lineage2.2.1 None
SRR6044875 HR-TB lineage4.9 None
SRR6044838 Other lineage4.9 None
SRR6044835 Sensitive lineage4 None
SRR6044876 Sensitive lineage4 None
SRR6045050 Sensitive lineage4.3.2.1 None
SRR6044890 Other lineage4.9 None
SRR6045053 Other None