Rv0667 - c.1413G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
101 Sensitive
12 RR-TB
36 HR-TB
19 MDR-TB
10 Pre-XDR-TB
2 XDR-TB
177 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1 | 1 |
| lineage4.9 | 148 |
| lineage4.1.3 | 3 |
| lineage6.3.1 | 1 |
| lineage4.8 | 9 |
| lineage4.9;lineage6.3 | 7 |
| 31 | |
| lineage4 | 7 |
| lineage2.2.1 | 27 |
| lineage4.3 | 1 |
| lineage4.1.2.1 | 18 |
| lineage4.4.1.1 | 3 |
| lineage2.2.1;lineage3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.1.1 | 3 |
| La3 | 2 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage1.1.1;lineage4 | 1 |
| La1.2.BCG | 1 |
| lineage3 | 8 |
| La1.7;lineage4.9 | 3 |
| lineage4.7 | 4 |
| lineage2.1;lineage4.9 | 14 |
| lineage4.3.3 | 5 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.1 | 3 |
| lineage2.2.1.2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;lineage4.9 | 3 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.2.1 | 2 |
| lineage1.1.3.2 | 1 |
| lineage4.2.1 | 3 |
| lineage2.2.2;lineage4 | 1 |
| lineage3.1.1 | 1 |
| lineage1.1.2;lineage4.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage6 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.1 | 1 |
| La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage3.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.6.5 | 1 |
| lineage1.1;lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 357 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786440 | Other | lineage4.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR11466174 | Other | lineage4.8 | None | SRR6045371 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR12416824 | HR-TB | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR4817893 | Other | lineage4.8 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR28119777 | Other | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR363502 | Other | lineage4.9 | None | ERR9117709 | Other | None | SRR3675247 | Other | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR1172234 | Other | lineage4.9 | None | SRR7496509 | Other | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR363447 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR373947 | Other | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | ERR11068570 | Other | lineage4 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR1915487 | Other | La1.2.BCG | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR29097037 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR1172857 | Other | None | ERR9787197 | Other | None | ERR4817060 | Other | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1173633 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675572 | Other | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR29096541 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4796577 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR1196768 | MDR-TB | None | ERR369162 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR1173355 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR7496517 | Other | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | SRR15368973 | Other | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | SRR29126968 | Sensitive | lineage4.7 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR6046066 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR11049020 | Other | lineage4.8 | None | ERR4817735 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | ERR400345 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR13289934 | Sensitive | lineage3 | None | ERR4800341 | Other | None | ERR363474 | Sensitive | lineage4.9 | None | ERR13289928 | Sensitive | lineage3 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4810741 | HR-TB | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4811142 | RR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR349299 | Other | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR4822101 | Sensitive | lineage1.1.2;lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | SRR29093909 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR9117721 | HR-TB | None | ERR349298 | Sensitive | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR4812155 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR4817998 | Other | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR926164 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR1173118 | Other | lineage2.2.1 | None | ERR4817069 | RR-TB | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR1173153 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184372 | MDR-TB | None | SRR6045323 | Sensitive | lineage3 | gb | SRR6046750 | Sensitive | lineage3 | gb | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR25827452 | MDR-TB | lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1173788 | Sensitive | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR1175074 | Other | None | ERR369151 | Other | lineage4.9 | None | ERR4815604 | Other | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR3675265 | Other | lineage4 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR1173384 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1023302 | MDR-TB | lineage3 | None | ERR1063855 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR4816999 | Other | None | SRR26159043 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR4811105 | HR-TB | None | SRR6789626 | Other | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4814683 | Sensitive | lineage1.1;lineage4.1.2.1 | None | ERR4811075 | Other | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None |
|---|
