EBG00000313339 - n.259C>A
Drug resistance types
91 Sensitive
14 RR-TB
74 HR-TB
23 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
110 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 188 |
| lineage2.2.1 | 30 |
| lineage4.8 | 12 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
| lineage3 | 4 |
| lineage1.1.2 | 2 |
| lineage4 | 4 |
| lineage4.2.1 | 3 |
| lineage4.7 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.3 | 2 |
| La3;lineage4.9 | 4 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.3.4.1 | 2 |
| lineage3;lineage4.9 | 1 |
| lineage2.2.1.1 | 4 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| 2 | |
| lineage4.5 | 3 |
| lineage4.1.2.1 | 6 |
| lineage4.4.1.1.1 | 2 |
| lineage4.6.2.2 | 1 |
| lineage2.2 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.3;lineage4.8 | 2 |
| lineage4.3.2.1 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6.1.3 | 2 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage1.2.1.2.1 | 1 |
| La1;lineage4.9 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.3 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 316 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045832 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR373946 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR7645928 | Other | lineage4.7 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4811030 | Other | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR400326 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR2229366 | Other | lineage4.8 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR1173421 | Other | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR349266 | Other | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | SRR6045359 | HR-TB | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR752229 | Other | lineage4.5 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR1181368 | Other | lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR7755657 | Other | lineage4.8 | None | ERR867566 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR363421 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR9786076 | Other | lineage3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR926165 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR369163 | Other | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR349299 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR349264 | Other | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | ERR2229541 | Other | lineage4.8 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | ERR363490 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR363479 | Other | lineage4.9 | None | SRR6045503 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR369159 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1173568 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR373945 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR1140724 | Other | lineage2.2.1 | None | ERR2229811 | Other | lineage4.8 | dk | SRR6046141 | Other | lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4799025 | Other | lineage4.8 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4818536 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR4798823 | HR-TB | lineage4 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR22250223 | HR-TB | lineage1.2.1.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR3675318 | Other | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363453 | Other | lineage4.9 | None | SRR21713567 | Other | lineage4.5 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR4769555 | Sensitive | La1.3 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1238558 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR363446 | Other | lineage4.9 | None | ERR1063896 | HR-TB | None | ERR349300 | Other | lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR363499 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR2229436 | Other | lineage4.8 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None |
|---|
