Rv3596c - c.1308A>G
Drug resistance types
132 Sensitive
6 RR-TB
109 HR-TB
17 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
100 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 65 |
| lineage4 | 107 |
| 93 | |
| lineage4.3.2.1 | 3 |
| lineage4.2.1 | 1 |
| lineage2.2.1 | 19 |
| lineage4.4.1.1 | 1 |
| lineage4.3.3 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.1.3 | 3 |
| lineage4.1 | 1 |
| lineage4.1.2.1 | 11 |
| lineage4.1.2 | 2 |
| lineage4.7 | 2 |
| lineage4.8 | 6 |
| lineage4.4.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2 | 6 |
| La1.8.1 | 6 |
| lineage6 | 2 |
| lineage5.1.2 | 1 |
| lineage4;lineage3.1 | 1 |
| La1.3 | 2 |
| La1.2 | 1 |
| lineage1.1.2 | 3 |
| lineage3 | 4 |
| La1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.3.4 | 2 |
| lineage1.2.1.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.1.1 | 2 |
| lineage6.1.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.1.1.3 | 1 |
| La1.7.1 | 1 |
| lineage4.5 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.9;lineage2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 371 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045832 | HR-TB | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044780 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6046066 | HR-TB | None | SRR6046046 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046225 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046492 | Other | None | SRR6046540 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6511627 | Sensitive | lineage4.3.3 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR323037 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR4817581 | HR-TB | lineage4.1.3 | gb | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | SRR8217918 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7496509 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323045 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1034634 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR3445503 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | ERR369163 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797069 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR387051 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3803778 | Other | lineage6 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4024991 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4187734 | Other | La1.8.1 | None | ERR4188247 | HR-TB | None | ERR4769450 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4769551 | Other | La1.3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797474 | Other | None | ERR4798431 | HR-TB | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6359066 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358979 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866639 | Other | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR9125510 | MDR-TB | lineage1.2.1.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119669 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR9117709 | HR-TB | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9896144 | Other | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR16058635 | MDR-TB | lineage1.2.1.2 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR8692812 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692782 | Other | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692887 | Other | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675465 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675236 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675265 | Other | lineage4 | None | SRR3675270 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675311 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675456 | HR-TB | None | ERR181887 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816999 | Other | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675572 | Other | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR4816585 | Other | lineage2.2 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR212138 | HR-TB | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816656 | HR-TB | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR245716 | Sensitive | lineage2.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818929 | HR-TB | None | SRR5341366 | Sensitive | lineage4 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4818615 | Other | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341396 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341425 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341456 | Other | None | SRR5341467 | Other | lineage4 | None | SRR5431730 | Other | La1.8.1 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None |
|---|
