EBG00000313339 - n.839C>G
Drug resistance types
119 Sensitive
24 RR-TB
32 HR-TB
24 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
159 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.2.1 | 1 |
| lineage4.8 | 12 |
| lineage4.4.1.1 | 9 |
| lineage4 | 70 |
| lineage2.2.1 | 26 |
| lineage1.1.2 | 5 |
| lineage3 | 29 |
| lineage4.3.4.2 | 1 |
| lineage3.1.2 | 2 |
| lineage4.9 | 66 |
| 21 | |
| lineage4.3.4.2.1 | 2 |
| lineage4.6.2.2 | 6 |
| lineage4.1.2.1 | 19 |
| lineage4.3.1.1 | 4 |
| lineage4.1.1.3 | 6 |
| lineage6.1.3 | 1 |
| lineage4.1.3 | 1 |
| lineage4.1.3;lineage1.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.1 | 7 |
| lineage4.1.2.1;lineage2.2.1 | 1 |
| lineage3.1.3 | 2 |
| lineage4.2.2.2 | 3 |
| lineage3.1 | 2 |
| lineage3.1.1 | 5 |
| lineage4.3.2.1 | 3 |
| lineage1.1.3.3 | 2 |
| lineage4.1.4 | 1 |
| lineage3.1.2.2 | 2 |
| lineage1.1.1.1 | 2 |
| lineage4.3.3 | 11 |
| lineage2.2.1.1 | 3 |
| lineage4.4.2;lineage2.2.1 | 1 |
| lineage4.1.2 | 4 |
| La1.2 | 2 |
| lineage4.1.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.6.1.1 | 2 |
| La1.8.1 | 2 |
| lineage5.1.2 | 1 |
| lineage4.9;La1.3 | 1 |
| La1.3 | 2 |
| lineage4.5 | 2 |
| lineage1.2.2.2 | 1 |
| La1.6 | 1 |
| La1.4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6 | 1 |
| lineage1.1.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage4.1 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage1.2.1.1 | 2 |
| lineage4.6 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.1.1.3.1 | 3 |
| lineage4.8.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 367 |
Geographic prevalence
Country level data for this variant is available for 37 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819372 | Sensitive | lineage1.2.1.2.1 | None | ERR3275239 | Sensitive | lineage4.8 | nl | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4819462 | Other | lineage4 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4819533 | Other | lineage1.1.2 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4819636 | Other | lineage3.1.2 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2514692 | Other | None | ERR2446382 | Other | lineage4 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR2514926 | Other | lineage4.6.2.2 | gb | SRR5341323 | Sensitive | lineage4 | None | ERR4820900 | Sensitive | lineage2.2.1 | gb | ERR4820833 | HR-TB | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | SRR6045447 | Other | lineage3 | gb | ERR4820130 | Other | lineage3 | None | ERR2517475 | Other | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4820193 | Other | lineage3 | None | ERR4821769 | Other | lineage4.1.2.1 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR6045485 | Other | lineage4.9 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821946 | Sensitive | lineage2.2.1 | gb | ERR4821154 | Other | lineage2.2.1 | gb | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045503 | HR-TB | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4822101 | Sensitive | lineage4.1.3;lineage1.1.2 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4822150 | Other | lineage4.8 | gb | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6045565 | Other | lineage4.6.2.2 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045709 | Other | lineage4.1.2.1;lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045713 | Sensitive | lineage3.1.3 | gb | SRR6045056 | Other | lineage2.2.1 | gb | SRR6045743 | Other | lineage3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045778 | Other | lineage3.1 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044936 | Other | lineage4 | None | SRR6044993 | Other | lineage3 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044904 | Other | lineage3 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044945 | HR-TB | lineage4.1.2.1 | gb | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6046020 | Other | lineage3 | None | SRR6045124 | Other | lineage4.9 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046246 | Other | lineage3 | None | SRR6046064 | Other | lineage3 | gb | SRR6045424 | Other | lineage1.1.2 | None | ERR4828962 | Other | lineage4.1.4 | it | SRR6046291 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046679 | Other | lineage3 | gb | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR6046852 | MDR-TB | lineage3 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046703 | Sensitive | lineage4.9 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046802 | Other | lineage4 | None | SRR6046818 | Other | lineage4.2.1 | gb | ERR4831638 | Sensitive | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046905 | Other | lineage3 | gb | ERR2884711 | Sensitive | lineage4.3.3 | es | ERR4832054 | MDR-TB | lineage2.2.1.1 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | ERR4831777 | MDR-TB | lineage2.2.1.1 | vn | ERR4831716 | HR-TB | lineage1.1.1.1 | None | ERR4831841 | HR-TB | lineage4.4.2;lineage2.2.1 | None | ERR4831839 | MDR-TB | lineage2.2.1 | None | ERR4831850 | HR-TB | lineage4.1.2 | vn | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR3275190 | Other | lineage3 | nl | ERR4831889 | HR-TB | lineage2.2.1 | None | ERR502943 | HR-TB | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131221 | Other | lineage4.6.2.2 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR7131251 | Other | lineage2.2.1 | None | SRR7851312 | Other | La1.2 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR10796623 | Other | lineage4.1.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796569 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796586 | Other | lineage4.9 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR3283028 | Other | None | ERR10796635 | Other | lineage4 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3283014 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR373947 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR400320 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769453 | Other | La1.3 | None | ERR4769472 | Other | lineage4.9 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4797313 | HR-TB | None | ERR4769495 | Other | La1.3 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR6197040 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736837 | Other | lineage4.9 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9117729 | Other | lineage3 | None | ERR9121714 | Sensitive | lineage4.3.3 | None | ERR9117788 | Other | lineage3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117806 | Other | lineage4.8 | None | SRR10315640 | MDR-TB | lineage4.8 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR16156775 | Other | lineage4.9 | None | SRR13837443 | Sensitive | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR1735591 | Other | lineage4.1.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18213726 | Other | lineage3 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR19303985 | Other | lineage4.8 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19303808 | Sensitive | lineage4.1.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18913750 | Other | lineage2.2.1 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | SRR19304094 | Other | lineage6 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22048392 | Other | lineage4.8 | None | SRR8692790 | RR-TB | lineage4 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692759 | Other | lineage4.9 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692776 | Other | lineage4.9 | None | ERR4815143 | HR-TB | lineage4.2.2.2 | None | ERR4815373 | Sensitive | lineage4.3.3 | None | SRR3675477 | Other | lineage4.9 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4814639 | HR-TB | lineage4 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675234 | Other | None | ERR4812763 | Other | lineage2.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675279 | Other | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675291 | Sensitive | lineage4.6 | gb | SRR3675292 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR4817464 | Other | lineage3.1.1 | None | SRR3675387 | Sensitive | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR3675522 | Other | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816231 | Other | lineage4 | None | ERR4816293 | Other | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4817131 | Pre-XDR-TB | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816699 | Other | lineage4.6 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817434 | Other | lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4817294 | Other | lineage4.1.2 | None | ERR4817452 | Other | lineage4.8 | None | ERR4815815 | Sensitive | lineage4 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR4818831 | Other | lineage3 | None | ERR4818873 | Other | lineage4.1.2 | gb | ERR2512660 | Sensitive | lineage3 | gb | ERR4817998 | Other | lineage3 | None | ERR4818265 | Other | lineage4.1.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818432 | HR-TB | lineage4.5 | gb | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4818958 | Other | lineage4.1.1 | gb | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR2513334 | Sensitive | lineage4.2.1 | gb | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR2513830 | RR-TB | lineage4.8 | None | ERR4820290 | Other | lineage3 | None | SRR5341396 | Other | lineage4 | None | ERR2513994 | MDR-TB | lineage2.2.1 | gb | ERR4819314 | Other | lineage1.1.1 | None |
|---|
