SRR3675247
|
Other
|
lineage4.9
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR3675441
|
Other
|
lineage4.9
|
None
|
SRR6046824
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR6045050
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR3797086
|
Sensitive
|
lineage4.9
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
ERR4816151
|
Sensitive
|
lineage4.8
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
ERR349296
|
Sensitive
|
lineage4.9
|
None
|
ERR6359070
|
Sensitive
|
lineage4.9
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR349264
|
Sensitive
|
lineage4.9
|
None
|
ERR349330
|
Sensitive
|
lineage4.9
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR133986
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
ERR4796577
|
HR-TB
|
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
ERR369162
|
Other
|
lineage4.9
|
None
|
ERR4811030
|
Sensitive
|
lineage4.9
|
None
|
ERR363453
|
Sensitive
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
ERR2693257
|
Other
|
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9
|
None
|
ERR067681
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR3797044
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9
|
None
|
SRR1175496
|
Sensitive
|
lineage4.9
|
None
|
ERR369158
|
Other
|
lineage4.9
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
ERR9786384
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR12708384
|
Sensitive
|
lineage4.9
|
None
|
ERR3797017
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR6046362
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
ERR4821172
|
RR-TB
|
lineage4.9
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR4178309
|
Other
|
lineage4.1.2.1
|
None
|
ERR2693231
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.9
|
None
|
ERR363490
|
Sensitive
|
lineage4.9
|
None
|
SRR14801759
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR363421
|
Sensitive
|
lineage4.9
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
ERR4816964
|
Sensitive
|
lineage4.9
|
None
|
ERR736856
|
Sensitive
|
lineage4.9
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
ERR4818561
|
Sensitive
|
lineage4.9
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
ERR3283031
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
ERR349265
|
Other
|
lineage4.9
|
None
|
ERR373945
|
Sensitive
|
lineage4.9
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
ERR363474
|
Sensitive
|
lineage4.9
|
None
|
ERR5311091
|
Other
|
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR6359069
|
Sensitive
|
lineage4.9
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
ERR349299
|
Other
|
lineage4.9
|
None
|
ERR3283020
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
SRR5341323
|
Sensitive
|
lineage4.9
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR4798406
|
MDR-TB
|
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
|
None
|
SRR3675260
|
Sensitive
|
lineage4.9
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
ERR2693230
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
ERR4769493
|
Other
|
lineage4.9
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
ERR363445
|
Other
|
lineage4.9
|
None
|
ERR158583
|
MDR-TB
|
La3;M.canetti;lineage2;lineage4.2;lineage4.3
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
SRR6832249
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3797065
|
RR-TB
|
lineage4.9
|
None
|
ERR373947
|
Other
|
lineage4.9
|
None
|
SRR6044835
|
Other
|
lineage4.9
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR11465189
|
RR-TB
|
lineage4.9.1
|
None
|
ERR373946
|
Sensitive
|
lineage4.9
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3797014
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR473334
|
HR-TB
|
lineage4.9
|
None
|
ERR363456
|
Sensitive
|
lineage4.9
|
None
|
SRR3675390
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
ERR4818536
|
Other
|
lineage4.9
|
None
|
ERR369156
|
Sensitive
|
lineage4.9
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
ERR502889
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
ERR363446
|
Sensitive
|
lineage4.9
|
None
|
ERR3797087
|
Sensitive
|
lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR28119827
|
Other
|
La3;lineage4.9
|
None
|
ERR2513229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
SRR6045217
|
Sensitive
|
lineage4.9
|
None
|
ERR3439432
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
ERR363500
|
Sensitive
|
lineage4.9
|
None
|
ERR181744
|
HR-TB
|
La3;lineage4.9
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
SRR6046611
|
Sensitive
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR4811031
|
Sensitive
|
lineage4.5
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR3283024
|
Other
|
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR3283028
|
Other
|
La3;lineage4
|
None
|
SRR6046460
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR369151
|
Other
|
lineage4.9
|
None
|
SRR3675580
|
Sensitive
|
lineage4.9
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR11662696
|
MDR-TB
|
La1.6;La3;M.canetti;lineage4.2.2
|
None
|
ERR9119669
|
HR-TB
|
lineage4.9
|
None
|
ERR2693245
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR3675522
|
Other
|
lineage4.9
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
SRR3675550
|
RR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
ERR363506
|
Sensitive
|
lineage4.9
|
None
|
ERR3275709
|
HR-TB
|
lineage3
|
nl
|
SRR3675455
|
Sensitive
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR5311103
|
RR-TB
|
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9
|
None
|
ERR4799547
|
HR-TB
|
lineage2.2.1
|
None
|
ERR349300
|
Sensitive
|
lineage4.9
|
None
|
ERR363479
|
Sensitive
|
lineage4.9
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
SRR3675473
|
Sensitive
|
lineage4.9
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
ERR736839
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
SRR18910194
|
HR-TB
|
lineage2.2.2
|
None
|
ERR2693254
|
Other
|
La1.6;La3;lineage4.9
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
SRR12708374
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
SRR6046897
|
Sensitive
|
lineage4.9
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR3797063
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR4178226
|
Sensitive
|
lineage4
|
None
|
ERR161039
|
HR-TB
|
La3;lineage4.3.4
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
ERR4814396
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
ERR4818958
|
Sensitive
|
lineage4.1.1.1
|
gb
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR11465232
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR11465352
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR1034634
|
HR-TB
|
lineage4.9
|
None
|
ERR363447
|
Other
|
lineage4.9
|
None
|
SRR6045706
|
Sensitive
|
lineage4.9
|
None
|
SRR6044819
|
Sensitive
|
lineage4.9
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
ERR349266
|
Sensitive
|
lineage4.9
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
ERR369157
|
Sensitive
|
lineage4.9
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
SRR3675234
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR5341418
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7
|
None
|
ERR403298
|
MDR-TB
|
M.canetti;lineage4.2
|
None
|
SRR5341396
|
Other
|
lineage3;lineage4.9
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
ERR11465361
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR2513283
|
Sensitive
|
lineage5.1.4
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR6046196
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR369159
|
Sensitive
|
lineage4.9
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
ERR4188322
|
Other
|
lineage4.6.4;lineage4.9
|
None
|
SRR6046385
|
Sensitive
|
lineage4.9
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
ERR4815471
|
Sensitive
|
lineage4.9
|
None
|
SRR3675586
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR4797350
|
Sensitive
|
lineage1;lineage4.9
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
ERR2513724
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
ERR4798431
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
ERR369163
|
Sensitive
|
lineage4.9
|
None
|
ERR363498
|
Sensitive
|
lineage4.9
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
ERR5311079
|
Other
|
La1.6;La3;M.canetti;lineage4.2;lineage4.9
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4821686
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR3797061
|
Other
|
La1.6;La3;lineage4.9
|
None
|
SRR17658565
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR369161
|
Sensitive
|
lineage4.9
|
None
|
ERR4830353
|
Other
|
La1.7
|
None
|
SRR5341293
|
Sensitive
|
lineage4.9
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
ERR3283014
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR363426
|
Sensitive
|
lineage4.9
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
ERR11465628
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR13423649
|
Sensitive
|
lineage2.2.1
|
None
|
ERR6865502
|
Sensitive
|
lineage4
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
ERR363449
|
Sensitive
|
lineage4.9
|
None
|
ERR4797588
|
MDR-TB
|
lineage3
|
None
|
ERR161037
|
Other
|
lineage4.9
|
None
|
ERR6865513
|
Other
|
lineage4.1.2.1
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR6046245
|
Other
|
lineage4.9
|
None
|
SRR6046720
|
HR-TB
|
lineage4.9;lineage9
|
None
|
ERR1035162
|
Other
|
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
ERR363509
|
Sensitive
|
lineage4.9
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
ERR363499
|
Sensitive
|
lineage4.9
|
None
|
ERR4816904
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR6046564
|
Sensitive
|
lineage4.9
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
SRR7535086
|
Other
|
|
None
|
SRR3675387
|
Other
|
lineage4.9
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
SRR3675229
|
Sensitive
|
lineage4.9
|
None
|
ERR369160
|
Sensitive
|
lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
ERR363502
|
Other
|
lineage4.9
|
None
|
SRR5341437
|
Sensitive
|
lineage4.9
|
None
|