Rv3596c - c.1587C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
60 Sensitive
3 RR-TB
32 HR-TB
12 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 79 |
| lineage4.3.4 | 1 |
| lineage2.2.1 | 9 |
| lineage4 | 5 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.1.2.1 | 6 |
| M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage3 | 4 |
| lineage4.3.2.1 | 2 |
| La3;lineage4.9 | 1 |
| lineage4.1.2 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| 6 | |
| lineage4.8 | 4 |
| lineage4.5 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.4.1 | 1 |
| La1.8.1 | 1 |
| La1.7;lineage4.9 | 2 |
| La1;lineage4.9 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 150 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819357 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR363445 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4797201 | Other | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | SRR6045371 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR363502 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | ERR234659 | Other | None | ERR4818536 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | ERR6358991 | HR-TB | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR6866639 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819241 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None |
|---|
