Rv0006 - c.105G>C
Drug resistance types
49 Sensitive
2 RR-TB
37 HR-TB
15 MDR-TB
3 Pre-XDR-TB
2 XDR-TB
108 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 75 |
| La1.7 | 2 |
| lineage2.1;lineage4.9 | 11 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| 21 | |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.2.1 | 11 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.3.2.1 | 2 |
| La1.7;lineage4.9 | 6 |
| lineage4.3.4.2.1 | 3 |
| lineage4.6.2.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.1.3 | 2 |
| lineage5.2 | 2 |
| lineage4.4.1.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage3 | 2 |
| lineage4.8 | 1 |
| lineage4.1.2 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
| La3;lineage4.9 | 6 |
| lineage4.6.1 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4 | 2 |
| La3 | 2 |
| lineage2.1 | 2 |
| La1;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.8.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.9;lineage6.3 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.3.3 | 3 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage1.1.1 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.8.1 | 2 |
| lineage4.1.1.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage6.3.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 216 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR1196583 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR6045371 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | ERR9117721 | HR-TB | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR9117709 | Other | None | SRR3675549 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | ERR9786604 | Other | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | SRR3675214 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR4797201 | Other | None | ERR4816999 | Other | None | ERR13265833 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811311 | Other | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR751326 | Other | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR369156 | Sensitive | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4818615 | Sensitive | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | SRR29096795 | Sensitive | lineage4.9 | None | ERR4813303 | HR-TB | lineage4.3.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR24799272 | Sensitive | lineage1.1.1 | None | ERR369151 | Other | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR21710918 | Sensitive | lineage1.1.1 | None | ERR4830353 | Other | La1.7 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR4800341 | Other | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR4821276 | Sensitive | lineage3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496509 | Other | None | ERR176751 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR3675311 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR14164454 | Sensitive | lineage4.3.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1181256 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None |
|---|
