Rv0667 - c.2709C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
64 Sensitive
1 RR-TB
17 HR-TB
7 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 82 |
| lineage2.2.1 | 9 |
| La1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7.1 | 3 |
| lineage4.4.1.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4 | 3 |
| lineage4.5 | 2 |
| lineage4.8 | 1 |
| 2 | |
| lineage1.1.1;lineage4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3 | 1 |
| lineage6.1.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.3.1 | 1 |
| La1.8.1 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage1.2.1.2.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 135 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR373947 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR21576674 | MDR-TB | lineage4.4.2 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR369151 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR3275473 | Other | La1.7.1 | nl | ERR2446533 | Other | La1.7.1 | nl | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR11662694 | Other | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR11069047 | Sensitive | lineage4.5 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341467 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR5341387 | Other | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2517349 | Other | La1.7.1 | nl | ERR473323 | HR-TB | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR12882013 | Sensitive | lineage1.1.3.1 | None | SRR5657362 | Other | La1.8.1 | None | SRR6046141 | Other | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR1063896 | Sensitive | None | SRR1159378 | Other | lineage4.9 | None | ERR9125589 | Other | lineage1.2.1.2.1 | None | SRR1791747 | Other | La1.8.1 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR16057989 | Other | lineage1.2.1.2.1 | None |
|---|
