Rv3457c - c.669G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
43 Sensitive
2 RR-TB
13 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 59 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage3 | 4 |
| lineage6 | 1 |
| lineage2.2.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.5 | 1 |
| lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 96 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675260 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR11465361 | MDR-TB | lineage4.3.4.1 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9787336 | RR-TB | lineage6 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR363447 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR1049672 | Other | lineage3 | None | ERR4830353 | Other | La1.7 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR369162 | Other | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR752229 | Other | lineage4.5 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR6045371 | Other | lineage4.9 | None |
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