lineage | Count |
---|---|
lineage2.2.1 | 17 |
29 | |
lineage3 | 6 |
lineage4.3 | 1 |
lineage4.3.2.1 | 2 |
lineage4.7 | 1 |
lineage4 | 39 |
lineage4.9 | 43 |
lineage4.2.1 | 3 |
lineage4.6.2.2 | 5 |
lineage4.1.2.1 | 6 |
lineage4.9;La1.3 | 1 |
lineage4.5 | 1 |
lineage2.2.2 | 1 |
lineage1.1.3.2 | 1 |
lineage2.2 | 5 |
lineage4.8;lineage4.1 | 2 |
lineage1.2.1.2 | 1 |
La1.4 | 1 |
lineage4.1 | 1 |
lineage4;lineage2.2 | 1 |
lineage4.1.1.3 | 2 |
lineage4.9;lineage3.1.1 | 1 |
lineage3.1.2.1 | 1 |
lineage4.8 | 3 |
lineage5.1.4 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.3.3 | 2 |
spoligotype | Count |
---|---|
None | 179 |
ID | Drug resistance | Lineage | Country iso2 | SRR9971112 | Other | lineage2.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR502943 | HR-TB | None | ERR3275190 | Other | lineage3 | nl | ERR3275941 | RR-TB | lineage4.3 | nl | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | ERR363453 | Sensitive | lineage4 | None | ERR10796569 | Other | lineage4.9 | None | ERR3283028 | Other | None | ERR3283047 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797043 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797048 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR400345 | Other | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4812155 | Sensitive | None | ERR4811030 | Sensitive | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR736839 | Other | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR10315567 | Other | lineage2.2.1 | None | ERR990545 | Other | lineage3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180440 | Other | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR16156775 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR3275450 | Other | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675279 | Other | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675510 | Other | None | SRR3675522 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR4816656 | HR-TB | None | ERR4816417 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818929 | HR-TB | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341396 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | ERR2446382 | Other | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR2517475 | Other | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6045706 | Sensitive | lineage4 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046460 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831638 | Sensitive | None |
---|