lineage | Count |
---|---|
lineage4 | 59 |
lineage2.2.1.2 | 2 |
lineage4.9 | 35 |
lineage4.5 | 1 |
lineage6 | 1 |
lineage4.1.2.1 | 4 |
lineage3 | 3 |
lineage2.2.1 | 8 |
47 | |
lineage1.1.1 | 1 |
lineage4.4 | 1 |
lineage4;lineage2.2 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage2.2 | 3 |
lineage4.3.4.2.1 | 4 |
lineage4.8 | 1 |
lineage4.1 | 1 |
lineage4.3.3 | 1 |
lineage4.3.2.1 | 1 |
lineage4.2.1 | 2 |
lineage4;lineage3 | 1 |
lineage4.3.4.1 | 2 |
lineage4.4.1.2 | 1 |
lineage4.1.1.3 | 1 |
La1 | 1 |
lineage4.3.4.1;La1.7 | 1 |
lineage4;lineage3.1 | 1 |
lineage5.1.2 | 1 |
La1.2 | 1 |
lineage3.1.2.1 | 1 |
lineage2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 189 |
ID | Drug resistance | Lineage | Country iso2 | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR9787336 | Other | lineage6 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736837 | Other | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16157123 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR8692800 | Other | lineage4 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692905 | HR-TB | None | SRR8692887 | Other | None | ERR176778 | HR-TB | None | SRR3675222 | Other | None | SRR3675488 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | SRR3675501 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675510 | Other | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3675555 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR212125 | HR-TB | lineage4 | None | ERR4817998 | Other | lineage3 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819051 | Other | lineage4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6044780 | Other | lineage4.9 | None | SRR5341456 | Other | None | SRR6045519 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045217 | Other | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045036 | Other | lineage4;lineage3 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046046 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | SRR6046299 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4830353 | Other | None | SRR6046492 | Other | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4831117 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR323045 | HR-TB | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR1063855 | Other | lineage4 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR3283047 | HR-TB | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283040 | HR-TB | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR3283021 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283055 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3445503 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR405209 | Sensitive | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798431 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811493 | HR-TB | None |
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