Rv0006 - c.-140C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
51 Sensitive
0 RR-TB
12 HR-TB
6 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
17 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.1 | 1 |
| lineage3 | 1 |
| lineage4.9 | 59 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.5 | 2 |
| M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.1;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage1.1.2 | 1 |
| lineage1.2.1.2;lineage4.5 | 1 |
| lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 86 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR4817998 | Other | lineage3 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3273131 | MDR-TB | lineage4.5 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR363502 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR363447 | Other | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR3273161 | MDR-TB | lineage4.5 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR202413 | Sensitive | lineage1.2.1.2;lineage4.5 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None |
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