Rv3696c - c.1188A>C


Drug resistance types
11 Sensitive 7 RR-TB 54 HR-TB 15 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 111 Other
lineage Counts
lineage Count
lineage4.9 77
lineage3.1.2.2 1
lineage4.9;lineage9 2
La1;lineage4.9 1
lineage4.1.1.1 1
La1.7;lineage4.9 5
La2;lineage4.9 1
La3 1
La1.7 2
lineage4.1.2.1 9
lineage5.2 2
M.canetti;lineage4.9 1
lineage4.1.2 2
lineage2.1;lineage4.9;lineage6.3 9
11
lineage4.5 1
lineage3 2
lineage2.1;lineage4.9 11
La3;lineage2.1;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9 2
lineage2.1;lineage6.3 1
lineage2.2.1 4
La1.8.1 1
lineage2.1 3
lineage4.9;lineage6.3 5
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage4 3
lineage6.1.1 2
lineage4.3.2 1
lineage4.3.2.1 1
La1.7;M.canetti;lineage4.9 2
lineage4.3.2;lineage4.9 1
lineage4.1.3 2
lineage4.2;lineage4.6.3;lineage4.9 1
lineage4.8 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage1.1.3.1 1
lineage6.3.1 1
La3;lineage1.1.2 1
lineage4.6.1.1 1
lineage4.9;lineage6.1.3 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage2.2.1.2;lineage7 1
La2;lineage4.9;lineage9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
La3;lineage2 1
La1;lineage4.1.2 1
lineage4.1;lineage4.9 1
La3;lineage2.2.1 1
lineage4.4.1.2 1
lineage6.1.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.2.2 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
lineage2.2.2 1
spoligotype Counts
spoligotype Count
None 200
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341308 HR-TB lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR5341461 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR3675235 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR1172728 RR-TB La3 None
ERR4830353 HR-TB La1.7 None
ERR3804155 Other lineage4.1.2.1 None
ERR369160 Sensitive lineage4.9 None
ERR363502 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR363453 Other lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
ERR4797184 HR-TB lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR363447 Other lineage4.9 None
ERR4818347 Other lineage4.1.2 None
ERR373947 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR9786601 Other lineage4.1.2.1 None
ERR502510 HR-TB lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR363456 Sensitive lineage4.9 None
ERR234659 HR-TB None
ERR2514692 Other None
SRR25827682 Other None
ERR9787197 Other None
ERR752229 Other lineage4.5 None
ERR369162 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR373945 Other lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR363499 Other lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
SRR1791747 Other La1.8.1 None
ERR6866639 HR-TB lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
ERR702406 Other lineage2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR5341384 HR-TB lineage4.9 None
ERR2027263 Other lineage4 None
SRR16156817 Other lineage4.9 None
SRR26399490 Sensitive lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
ERR3799304 RR-TB lineage6.1.1 None
SRR21726722 Other lineage4.3.2 None
SRR3675267 Other La1.7;lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR9971270 RR-TB lineage2.2.1 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR323062 HR-TB lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR363498 Other lineage4.9 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR3675585 HR-TB lineage4.9 None
SRR6045706 Other lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR3797047 MDR-TB lineage4.9 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR4178226 Sensitive lineage4 None
SRR6458423 HR-TB lineage2.2.1 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR2229542 Other lineage4.8 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR363500 Other lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR6045503 Other lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR1184381 MDR-TB None
ERR9786671 Other None
ERR9786604 Other None
SRR6789626 Other None
SRR3675236 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR3675385 Other La1.7;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR4798099 HR-TB lineage4.9 None
ERR369158 Other lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
ERR9787014 RR-TB lineage6.1.1 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR9970980 HR-TB lineage4.1.2 None
ERR6866410 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR369163 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1184312 Other lineage2.2.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR349265 Other lineage4.9 None
ERR363426 Sensitive lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR6865502 Sensitive lineage4 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6789621 Other lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675248 Other lineage4.9 None
ERR349299 Other lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR349264 Other lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
SRR6045371 Other lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675488 Other La1.7;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
SRR5341453 Other lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR9786694 Other lineage4.1.2.1 None
SRR20969677 HR-TB La3;lineage2 None
SRR9970978 Other La1;lineage4.1.2 None
ERR3797046 HR-TB lineage4.9 None
SRR3675222 Other La1.7 None
SRR10808730 Other lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR9787165 Other lineage6.1.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045892 Sensitive lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
ERR736834 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283021 MDR-TB lineage4.9 None
ERR363479 Other lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
ERR349266 Other lineage4.9 None
ERR369159 Other lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR363446 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR18213713 HR-TB None
ERR4407463 HR-TB None
ERR349300 Other lineage4.9 None
ERR137286 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR363449 Other lineage4.9 None
ERR4817998 Other lineage3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR363421 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR702405 HR-TB lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR3675501 Other La1.7;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR363506 Sensitive lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR373946 Other lineage4.9 None
SRR6046897 Sensitive lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675461 RR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR26159043 Other lineage4.9 None