Rv3696c - c.1188A>C
Drug resistance types
11 Sensitive
7 RR-TB
54 HR-TB
15 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
111 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2 | 2 |
| La1.8.1 | 1 |
| lineage4.9 | 77 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage4.1.2.1 | 9 |
| lineage2.1;lineage4.9 | 11 |
| lineage2.2.1 | 4 |
| lineage4.9;lineage6.3 | 5 |
| lineage4.9;lineage9 | 2 |
| lineage4 | 3 |
| lineage6.1.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.7;lineage4.9 | 5 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| 11 | |
| lineage3 | 2 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.2 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage5.2 | 2 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La1;lineage4.1.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.1 | 3 |
| lineage4.8 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.5 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 200 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1791747 | Other | La1.8.1 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2027263 | Other | lineage4 | None | ERR349265 | Other | lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR3799304 | RR-TB | lineage6.1.1 | None | SRR21726722 | Other | lineage4.3.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR5341453 | Other | lineage4.9 | None | ERR4830353 | HR-TB | La1.7 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4797184 | HR-TB | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR10808730 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045503 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR369159 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9787197 | Other | None | ERR349300 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR373945 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR2446566 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR3675221 | Other | lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR373947 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR363500 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363479 | Other | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR349266 | Other | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR9786604 | Other | None | SRR6789626 | Other | None | ERR234659 | HR-TB | None | ERR2514692 | Other | None | SRR18213713 | HR-TB | None | SRR25827682 | Other | None | ERR4407463 | HR-TB | None | SRR3675236 | Other | None | ERR752229 | Other | lineage4.5 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR363449 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR363421 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR349264 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR363453 | Other | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR363447 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | ERR9786671 | Other | None | ERR369162 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR363499 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None |
|---|
