lineage | Count |
---|---|
lineage4 | 141 |
lineage4.9;lineage2.1 | 1 |
lineage4.9 | 214 |
lineage4.4.1.1 | 8 |
lineage2.2.1.1 | 3 |
67 | |
La1.8.1 | 7 |
lineage4.7 | 4 |
lineage3 | 36 |
lineage4.1.2.1 | 22 |
lineage4.8 | 26 |
lineage5 | 2 |
lineage2.2.1 | 55 |
lineage4.1.3 | 1 |
lineage4.3.3 | 13 |
lineage4.1.1.3 | 7 |
lineage4.9;lineage4.2.1 | 2 |
lineage4.2.2.2 | 1 |
lineage4.2.1 | 7 |
lineage4.3.4.2.1 | 10 |
lineage1.1.2 | 8 |
lineage3.1.2.2 | 1 |
lineage4.6.1 | 1 |
lineage4.1 | 2 |
lineage5.1.1 | 1 |
lineage4.3 | 1 |
lineage4.6.1.1 | 2 |
lineage4.1.2 | 3 |
lineage4.3.2.1 | 3 |
lineage4.4.1.2 | 3 |
lineage4.9.1 | 1 |
lineage2.2 | 9 |
lineage4.9;lineage4.1 | 1 |
lineage4.3.4.1 | 1 |
lineage4.3.4 | 2 |
lineage6.2.3;lineage1.1.2 | 1 |
La1.7.X-unk4 | 1 |
lineage5.1.2 | 1 |
lineage4;lineage3.1 | 1 |
lineage4.9;La1.3 | 1 |
lineage2.2.2 | 8 |
lineage4.5 | 3 |
lineage4.6.5 | 3 |
lineage1.1.3.1 | 3 |
lineage3.1.1 | 2 |
lineage6.1.3 | 1 |
lineage6 | 2 |
lineage2.2.2;lineage2.2.1 | 1 |
lineage4;lineage2.2.2 | 1 |
lineage4.8;lineage4.3.3 | 4 |
lineage4.6.1.2 | 5 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.9;lineage2.2.1 | 1 |
La1.6 | 1 |
lineage4.4.2 | 2 |
lineage4.4 | 1 |
La1.4 | 1 |
La1.7.1 | 3 |
lineage3.1.3 | 2 |
lineage4;lineage2.2 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.9;lineage3.1.1 | 1 |
lineage2.1 | 2 |
lineage1.2.1.1 | 2 |
lineage4.2 | 1 |
lineage3.1 | 1 |
lineage4.6.2.2 | 3 |
lineage3.1.2.1 | 2 |
lineage4;lineage2 | 1 |
lineage4.3.4.2 | 1 |
lineage4.6.3 | 1 |
lineage1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.9;lineage4.1.2 | 1 |
lineage6.3.1 | 1 |
lineage5.1.4 | 1 |
lineage4.1.1.3.1 | 2 |
lineage4.8.2 | 1 |
lineage1.2.2.2 | 1 |
lineage1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 743 |
ID | Drug resistance | Lineage | Country iso2 | ERR4821057 | HR-TB | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6045503 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR2747597 | Other | La1.8.1 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821214 | RR-TB | None | ERR4821276 | Other | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821310 | Other | lineage5 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045010 | Other | lineage4 | None | SRR6045158 | Other | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR6045320 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046385 | Other | lineage4.9 | None | ERR4829208 | RR-TB | lineage4.8 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6511621 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR3078008 | MDR-TB | lineage4.6.1 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831638 | Sensitive | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502943 | HR-TB | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR3275190 | Other | lineage3 | nl | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7131160 | Sensitive | lineage3 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR019855 | Other | lineage3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323045 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR017781 | Other | lineage3 | None | ERR067712 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR036207 | Other | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR1023494 | Sensitive | lineage3 | None | ERR1034634 | HR-TB | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR1035122 | Sensitive | None | ERR1063855 | Other | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063858 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR1063883 | Sensitive | lineage4 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10748430 | MDR-TB | lineage2.2.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR10796634 | Other | lineage4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR108471 | HR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3439265 | Other | lineage4.9 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR400345 | Other | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR405191 | Other | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4188247 | HR-TB | None | ERR4627311 | Other | La1.8.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473311 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796577 | MDR-TB | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797141 | Sensitive | lineage3 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797264 | Sensitive | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798431 | HR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6359070 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4812155 | Sensitive | None | ERR6359066 | HR-TB | lineage4 | None | ERR4811030 | Sensitive | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866639 | Other | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119669 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9119101 | Sensitive | lineage4.3.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9787336 | Other | lineage6 | None | SRR1013528 | Pre-XDR-TB | lineage2.2 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR1013527 | RR-TB | lineage2.2 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049041 | MDR-TB | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049672 | Other | lineage3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062865 | HR-TB | lineage2.2.2 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1106670 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140736 | RR-TB | None | SRR1141261 | MDR-TB | lineage4.9 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1166181 | MDR-TB | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1173833 | Other | lineage4.9 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173656 | Sensitive | lineage1.1.2 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | None | SRR1168955 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180440 | Other | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181161 | Other | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13861140 | MDR-TB | lineage4.9 | None | SRR13861138 | RR-TB | lineage4.9 | None | SRR13861149 | RR-TB | lineage4.9 | None | SRR13861162 | Other | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861170 | RR-TB | lineage4.9 | None | SRR13861182 | RR-TB | lineage4.9 | None | SRR13861169 | RR-TB | lineage4.9 | None | SRR13861178 | RR-TB | lineage4.9 | None | SRR13861199 | RR-TB | lineage4.9 | None | SRR13861218 | RR-TB | lineage4.9 | None | SRR13861207 | Other | lineage4.9 | None | SRR13861216 | RR-TB | lineage4.9 | None | SRR13861233 | RR-TB | lineage4.9 | None | SRR13861320 | RR-TB | lineage4.9 | None | SRR13861283 | Other | lineage4.9 | None | SRR13861310 | RR-TB | lineage4.9 | None | SRR13861321 | RR-TB | lineage4.9 | None | SRR13861277 | RR-TB | lineage4.9 | None | SRR13861276 | RR-TB | lineage4.9 | None | SRR13861282 | RR-TB | lineage4.9 | None | SRR13861316 | RR-TB | lineage4.9 | None | SRR13861341 | RR-TB | lineage4.9 | None | SRR13861393 | Sensitive | lineage4.9 | None | SRR13861346 | RR-TB | lineage4.9 | None | SRR13861351 | Other | lineage4.9 | None | SRR13861353 | Other | lineage4.9 | None | SRR13861357 | RR-TB | lineage4.9 | None | SRR13861385 | Sensitive | lineage4.9 | None | SRR13861344 | RR-TB | lineage4.9 | None | SRR13861378 | RR-TB | lineage4.9 | None | SRR13861437 | RR-TB | lineage4.9 | None | SRR13861402 | Other | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861451 | RR-TB | lineage4.9 | None | SRR13861458 | MDR-TB | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861488 | RR-TB | lineage4.9 | None | SRR13861440 | RR-TB | lineage4.9 | None | SRR13861462 | Other | lineage4.9 | None | SRR13861501 | RR-TB | lineage4.9 | None | SRR13861508 | RR-TB | lineage4.9 | None | SRR13861506 | RR-TB | lineage4.9 | None | SRR13861524 | RR-TB | lineage4.9 | None | SRR13861513 | RR-TB | lineage4.9 | None | SRR13861589 | RR-TB | lineage4.9 | None | SRR13861547 | RR-TB | lineage4.9 | None | SRR13861563 | RR-TB | lineage4.9 | None | SRR13861542 | RR-TB | lineage4.9 | None | SRR13861545 | Other | lineage4.9 | None | SRR13861590 | RR-TB | lineage4.9 | None | SRR13861676 | Sensitive | lineage4.9 | None | SRR13861618 | RR-TB | lineage4.9 | None | SRR13861713 | RR-TB | lineage4.9 | None | SRR13861695 | RR-TB | lineage4.9 | None | SRR13861729 | RR-TB | lineage4.9 | None | SRR13861737 | RR-TB | lineage4.9 | None | SRR13861736 | RR-TB | lineage4.9 | None | SRR13861735 | MDR-TB | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16278274 | Other | La1.4 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18572456 | Sensitive | lineage4.9 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18572454 | RR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR8692885 | Other | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692825 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR176778 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | ERR176779 | HR-TB | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4815777 | Other | lineage4.9 | None | ERR4815310 | Other | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4815023 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR2446544 | Sensitive | lineage3 | nl | ERR702405 | Sensitive | lineage2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675279 | Other | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | ERR4814976 | Other | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814700 | Other | lineage4.3.3 | None | SRR3675229 | Other | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4814748 | Other | lineage4.8 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675387 | Sensitive | None | SAMN02381005 | Other | lineage4.6.1.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675509 | Other | lineage4.9 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4816967 | RR-TB | lineage5 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4815909 | Other | lineage4.8 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR4816043 | Other | lineage4.2 | None | SRR3675522 | Other | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR4816192 | Sensitive | lineage3 | None | SRR3675552 | RR-TB | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR4816334 | Other | lineage4.6.2.2 | None | ERR212125 | HR-TB | lineage4 | None | ERR4817069 | RR-TB | None | ERR3275548 | Sensitive | lineage3 | nl | ERR2446509 | Other | lineage3 | nl | SRR3675577 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816464 | Other | lineage3 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4817131 | Pre-XDR-TB | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4817204 | RR-TB | lineage4.9 | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR3742667 | Sensitive | lineage4.9 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | SRR4033434 | Sensitive | lineage4.3.2.1 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR2228810 | RR-TB | lineage4 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817292 | Sensitive | lineage4.3.4.2.1 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2228890 | Other | lineage4 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4 | None | ERR2229519 | Sensitive | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR2228910 | Other | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR4818710 | Sensitive | lineage4.9 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR4819017 | RR-TB | lineage3 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818126 | RR-TB | lineage1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818368 | Sensitive | lineage4.9;lineage4.1.2 | None | ERR4818936 | Other | lineage4.1.2.1 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4818536 | Other | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818574 | Other | lineage6 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5341453 | Sensitive | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4818624 | Other | lineage4.3.4.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341396 | Other | lineage4 | None | ERR4820256 | Other | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341387 | Other | lineage4 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2513903 | Other | lineage4.4.1.1 | gb | ERR4819314 | Other | lineage1.1.1 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4 | None | ERR2514137 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR4819525 | Other | lineage3 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819462 | Other | lineage4 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820394 | Other | lineage4.3.4.2.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR2514552 | Sensitive | lineage3 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | ERR4819784 | Other | lineage4.1.2.1 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | ERR1023509 | Other | None | ERR4820820 | Other | lineage1.2.1.1 | gb | SRR5341313 | HR-TB | None | ERR2446382 | Other | lineage4 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR2514929 | HR-TB | lineage1.1.2 | None | SRR5341315 | Sensitive | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | ERR4820833 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR4820679 | Other | lineage4.8 | None | SRR5341467 | Other | lineage4 | None | ERR2517457 | Sensitive | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | SRR5341469 | Other | lineage4 | None | ERR2517475 | Other | lineage4 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None |
---|