Run ID: ERR4821747
Sample name:
Date: 01-04-2023 17:25:52
Number of reads: 189973
Percentage reads mapped: 4.15
Strain: lineage4.9;lineage4.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.96 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 0.08 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761127 | p.Ser441Ala | missense_variant | 1.0 | rifampicin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.86 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 1.0 | kanamycin, capreomycin, aminoglycosides, amikacin |
katG | 2155693 | p.Ser140Asn | missense_variant | 0.75 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8923 | p.Gly541Val | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575953 | c.606G>A | synonymous_variant | 0.67 |
rpoB | 760208 | p.Ile134Met | missense_variant | 1.0 |
rpoB | 760212 | p.Asn136His | missense_variant | 1.0 |
rpoB | 760215 | p.Asn137Gln | missense_variant | 1.0 |
rpoB | 760234 | p.Ser143Thr | missense_variant | 1.0 |
rpoB | 760244 | c.438G>C | synonymous_variant | 1.0 |
rpoB | 760253 | c.447T>C | synonymous_variant | 1.0 |
rpoB | 760263 | p.Met153Leu | missense_variant | 1.0 |
rpoB | 760266 | p.Met154Gln | missense_variant | 1.0 |
rpoB | 760274 | p.Glu156Asp | missense_variant | 1.0 |
rpoB | 760298 | c.492G>C | synonymous_variant | 1.0 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 1.0 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 1.0 |
rpoB | 761013 | p.Val403Ile | missense_variant | 1.0 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 1.0 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 1.0 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 1.0 |
rpoB | 761046 | p.Ile414Val | missense_variant | 1.0 |
rpoB | 761051 | c.1245G>T | synonymous_variant | 1.0 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 1.0 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 1.0 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 1.0 |
rpoB | 761063 | c.1257C>G | synonymous_variant | 1.0 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 1.0 |
rpoB | 761088 | c.1282_1284delAGCinsTCG | synonymous_variant | 1.0 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 1.0 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 1.0 |
rpoB | 761126 | c.1320G>C | synonymous_variant | 1.0 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 1.0 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 1.0 |
rpoB | 761147 | c.1341C>T | synonymous_variant | 1.0 |
rpoB | 761150 | c.1344A>T | synonymous_variant | 1.0 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 1.0 |
rpoB | 761180 | c.1374A>G | synonymous_variant | 0.75 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.75 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.6 |
rpoB | 761196 | p.Leu464Val | missense_variant | 0.6 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.6 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.5 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.43 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.89 |
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 0.94 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.98 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.94 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.95 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.95 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.93 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.9 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.88 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 1.0 |
rpoC | 763052 | c.-318G>C | upstream_gene_variant | 1.0 |
rpoC | 763053 | c.-317_-315delTTGinsCTC | upstream_gene_variant | 1.0 |
rpoC | 763058 | c.-312C>G | upstream_gene_variant | 1.0 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 1.0 |
rpoB | 763075 | p.Thr1090Ile | missense_variant | 1.0 |
rpoB | 763077 | p.Val1091Leu | missense_variant | 1.0 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.97 |
rpoB | 763126 | p.Pro1107Gln | missense_variant | 0.96 |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.95 |
rpoC | 763136 | c.-234C>T | upstream_gene_variant | 0.95 |
rpoC | 763148 | c.-222G>C | upstream_gene_variant | 0.93 |
rpoC | 763443 | p.Tyr25Phe | missense_variant | 1.0 |
rpoC | 763456 | c.87A>G | synonymous_variant | 1.0 |
rpoC | 763462 | c.93G>C | synonymous_variant | 1.0 |
rpoC | 763483 | c.114G>C | synonymous_variant | 1.0 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.95 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.95 |
rpoC | 763504 | c.135C>T | synonymous_variant | 0.96 |
rpoC | 763511 | p.Cys48Gly | missense_variant | 0.95 |
rpoC | 763517 | p.Lys50Gln | missense_variant | 0.96 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.96 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.96 |
rpoC | 763532 | p.Thr55Ser | missense_variant | 0.96 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.96 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.93 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.88 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.88 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.94 |
rpoC | 763609 | c.240C>G | synonymous_variant | 0.88 |
rpoC | 763614 | c.246_251delGACCCG | disruptive_inframe_deletion | 0.67 |
rpoC | 763622 | p.Ala85Thr | missense_variant | 0.67 |
rpoC | 763627 | c.258_259insAGCTCC | conservative_inframe_insertion | 0.67 |
rpoC | 763630 | c.261G>C | synonymous_variant | 0.67 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.67 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.67 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.78 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.92 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.93 |
rpoC | 763699 | c.330G>C | synonymous_variant | 0.93 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.93 |
rpoC | 763709 | c.340C>T | synonymous_variant | 0.93 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.93 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.93 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.93 |
rpoC | 763727 | p.Leu120Met | missense_variant | 0.93 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.93 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.89 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.91 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.79 |
rpoC | 763772 | p.Val135Met | missense_variant | 0.5 |
rpoC | 764344 | c.975C>T | synonymous_variant | 1.0 |
rpoC | 764353 | c.984G>C | synonymous_variant | 1.0 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 1.0 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 1.0 |
rpoC | 764381 | c.1012_1013delTCinsAG | synonymous_variant | 1.0 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 1.0 |
rpoC | 764398 | c.1029G>C | synonymous_variant | 0.8 |
rpoC | 764404 | c.1035C>T | synonymous_variant | 0.8 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.8 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.88 |
rpoC | 764587 | c.1218C>G | synonymous_variant | 0.89 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.95 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.97 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.98 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.99 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.99 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.96 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.95 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.94 |
rpoC | 764740 | p.Met457Ile | missense_variant | 0.7 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.62 |
rpoC | 764750 | p.Val461Ile | missense_variant | 0.5 |
rpoC | 765376 | c.2007C>T | synonymous_variant | 0.67 |
mmpL5 | 776638 | p.Glu615Lys | missense_variant | 0.67 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781407 | c.-153C>A | upstream_gene_variant | 0.67 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.83 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.92 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.89 |
rpsL | 781794 | p.Met79Leu | missense_variant | 0.9 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.96 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.96 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.96 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.96 |
rpsL | 781841 | c.282C>T | synonymous_variant | 0.95 |
rpsL | 781851 | p.Ile98Val | missense_variant | 0.83 |
rplC | 800672 | c.-137G>C | upstream_gene_variant | 0.67 |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.67 |
rplC | 800702 | c.-107G>C | upstream_gene_variant | 0.67 |
rplC | 800703 | c.-106_-104delTTGinsCTC | upstream_gene_variant | 0.67 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.55 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.5 |
rplC | 800729 | c.-80G>C | upstream_gene_variant | 0.55 |
rplC | 800733 | c.-76A>G | upstream_gene_variant | 0.55 |
rplC | 800738 | c.-71T>C | upstream_gene_variant | 0.55 |
rplC | 800742 | c.-67G>T | upstream_gene_variant | 0.55 |
rplC | 800747 | c.-62C>G | upstream_gene_variant | 0.55 |
rplC | 800753 | c.-56C>T | upstream_gene_variant | 0.38 |
rplC | 800754 | c.-55A>C | upstream_gene_variant | 0.38 |
embR | 1417524 | c.-177G>T | upstream_gene_variant | 1.0 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472284 | n.439C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472571 | n.726G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472645 | n.800G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472660 | n.815T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472666 | n.821G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472694 | n.849C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473269 | n.1424C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473320 | n.1475G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474351 | n.694G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474354 | n.697C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474359 | n.702C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475751 | n.2094C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475777 | n.2120A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476413 | n.2756A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833931 | c.390C>G | synonymous_variant | 0.67 |
rpsA | 1833934 | c.393C>T | synonymous_variant | 0.67 |
rpsA | 1833955 | c.414G>C | synonymous_variant | 0.75 |
rpsA | 1833959 | p.Leu140Val | missense_variant | 0.75 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.75 |
rpsA | 1833976 | c.435C>T | synonymous_variant | 0.75 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.75 |
rpsA | 1833991 | c.450C>A | synonymous_variant | 0.75 |
rpsA | 1833997 | c.456G>C | synonymous_variant | 0.67 |
rpsA | 1833998 | p.Val153Ile | missense_variant | 0.67 |
rpsA | 1834004 | p.Met155Leu | missense_variant | 0.67 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.67 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 1.0 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 1.0 |
rpsA | 1834046 | p.Ile169Leu | missense_variant | 1.0 |
rpsA | 1834061 | p.Ile174Leu | missense_variant | 1.0 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 1.0 |
rpsA | 1834093 | c.552G>C | synonymous_variant | 0.67 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.67 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.67 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102514 | p.Gly177Trp | missense_variant | 0.5 |
katG | 2155643 | p.Lys157Gln | missense_variant | 0.75 |
katG | 2155674 | c.438G>C | synonymous_variant | 0.86 |
katG | 2155689 | c.421_423delTTGinsCTC | synonymous_variant | 0.75 |
katG | 2155695 | p.Ala139Val | missense_variant | 0.75 |
katG | 2155704 | c.408C>G | synonymous_variant | 0.75 |
katG | 2155716 | c.396T>G | synonymous_variant | 0.75 |
katG | 2155728 | c.384G>C | synonymous_variant | 0.75 |
katG | 2155880 | p.Arg78Trp | missense_variant | 0.67 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289368 | c.-127G>T | upstream_gene_variant | 0.67 |
Rv2752c | 3066009 | c.183G>T | synonymous_variant | 1.0 |
thyA | 3073923 | p.Leu183Phe | missense_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449336 | p.Gly278Asp | missense_variant | 0.67 |
alr | 3840580 | p.Val281Phe | missense_variant | 0.67 |
rpoA | 3877920 | c.588G>C | synonymous_variant | 1.0 |
rpoA | 3877929 | p.Ile193Val | missense_variant | 0.67 |
rpoA | 3877932 | c.576G>C | synonymous_variant | 0.67 |
rpoA | 3878680 | c.-173C>T | upstream_gene_variant | 1.0 |
clpC1 | 4038755 | c.1950G>C | synonymous_variant | 0.75 |
clpC1 | 4038764 | c.1941C>G | synonymous_variant | 0.75 |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 1.0 |
clpC1 | 4038776 | p.Glu643Asp | missense_variant | 1.0 |
clpC1 | 4038794 | p.Ser637Leu | missense_variant | 1.0 |
clpC1 | 4038801 | p.Tyr635Phe | missense_variant | 1.0 |
clpC1 | 4038803 | p.Ile634Val | missense_variant | 1.0 |
clpC1 | 4038806 | p.Glu633Asp | missense_variant | 1.0 |
clpC1 | 4038809 | p.Gln632Pro | missense_variant | 1.0 |
clpC1 | 4038838 | c.1867C>T | synonymous_variant | 1.0 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 1.0 |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 1.0 |
clpC1 | 4040000 | p.His235Lys | missense_variant | 1.0 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 1.0 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 1.0 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 1.0 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 1.0 |
clpC1 | 4040030 | c.675C>G | synonymous_variant | 1.0 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 1.0 |
clpC1 | 4040036 | c.669C>G | synonymous_variant | 1.0 |
clpC1 | 4040042 | c.663C>A | synonymous_variant | 1.0 |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 1.0 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 1.0 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.88 |
clpC1 | 4040069 | c.636G>C | synonymous_variant | 0.88 |
clpC1 | 4040083 | p.Thr208Ser | missense_variant | 0.57 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 0.5 |
clpC1 | 4040090 | c.615T>G | synonymous_variant | 0.5 |
clpC1 | 4040096 | p.Val203Ile | missense_variant | 0.5 |
clpC1 | 4040105 | c.600C>G | synonymous_variant | 0.44 |
clpC1 | 4040108 | c.597G>C | synonymous_variant | 0.44 |
clpC1 | 4040129 | c.576C>G | synonymous_variant | 0.4 |
clpC1 | 4040618 | c.87C>T | synonymous_variant | 1.0 |
clpC1 | 4040643 | p.Arg21Lys | missense_variant | 0.5 |
clpC1 | 4040645 | c.60C>G | synonymous_variant | 0.5 |
clpC1 | 4040657 | c.48T>C | synonymous_variant | 0.5 |
embC | 4240183 | c.321A>G | synonymous_variant | 0.33 |
embC | 4240204 | c.342T>C | synonymous_variant | 0.33 |
embC | 4240210 | c.348C>G | synonymous_variant | 0.33 |
embC | 4240216 | c.354T>C | synonymous_variant | 0.33 |
embC | 4240228 | c.367_370delCTGC | frameshift_variant | 0.33 |
embC | 4240234 | p.Gln124His | missense_variant | 0.33 |
embC | 4240236 | c.374_375insTGCC | frameshift_variant | 0.4 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245556 | c.2327delG | frameshift_variant | 0.5 |
ubiA | 4269919 | c.-86T>C | upstream_gene_variant | 1.0 |