Rv0668 - c.-390T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
37 Sensitive
37 RR-TB
58 HR-TB
40 MDR-TB
30 Pre-XDR-TB
2 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 43 |
| lineage2.2.2 | 19 |
| lineage4.5 | 6 |
| lineage2.2.1 | 54 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.1 | 4 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2.1 | 7 |
| lineage1.1.2 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage3 | 20 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| lineage2.2;lineage4 | 2 |
| lineage4.6.1.2 | 5 |
| lineage2.2.1;lineage2.2.2 | 5 |
| lineage2 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.2.1 | 4 |
| lineage4.1.1.1 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1.3 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.1.2 | 2 |
| lineage4.8.1 | 2 |
| La1.8.1 | 1 |
| lineage2.2.1;lineage4 | 3 |
| La2 | 1 |
| lineage2.2.2;lineage4 | 8 |
| La1.6 | 1 |
| lineage4.3.1.1 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.6.1.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3;lineage4 | 2 |
| M.canetti;lineage4.9 | 2 |
| 2 | |
| lineage2.2.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4 | 2 |
| lineage4.7 | 1 |
| lineage4.6 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.4.2 | 4 |
| lineage1.2.1.1 | 1 |
| lineage4.8 | 3 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 2 |
| La1.7;lineage4.9 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.3 | 1 |
| La1.4 | 1 |
| lineage4.4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 255 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4821747 | Sensitive | lineage4.9 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR1181588 | Sensitive | lineage4.9 | None | SRR7069097 | Other | lineage3.1.2.1 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR5007165 | Other | lineage3 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR405191 | Sensitive | lineage4.9 | None | SRR1183684 | Other | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR1048995 | HR-TB | lineage4.5 | None | ERR1023494 | Sensitive | lineage3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR7131160 | Sensitive | lineage3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049040 | HR-TB | lineage2 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02599067 | Sensitive | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR13888750 | Other | La2 | None | SRR18002875 | MDR-TB | lineage2.2.2;lineage4 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013595 | Sensitive | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR4769493 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR4033434 | Sensitive | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796598 | Other | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR4817069 | RR-TB | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR1181256 | Other | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6044952 | Other | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4796577 | HR-TB | None | SRR1013609 | Sensitive | lineage4 | None | SRR1013611 | Sensitive | lineage4.5 | None | SRR1140716 | Other | lineage3 | None | SRR7645928 | Other | lineage4.7 | None | SRR6044936 | Other | lineage4.6 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR17567930 | Sensitive | lineage4.4.1.1 | None | SRR1013612 | Sensitive | lineage4.5 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6046117 | Other | lineage4.9 | None | SRR1013596 | Sensitive | lineage3 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR751317 | Sensitive | lineage4.9 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR4829238 | Sensitive | lineage3 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR7070329 | Other | lineage3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SAMN02599089 | MDR-TB | lineage3 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7069319 | Other | lineage4.5 | None | SRR1181299 | Other | lineage4.9 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013610 | Sensitive | lineage4 | None | SRR1013600 | Sensitive | lineage2.2.1.1 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR1183339 | Other | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173770 | Other | lineage4.9 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18213736 | Other | lineage3 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR405190 | Sensitive | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR7070223 | HR-TB | lineage3 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR7069518 | Other | lineage4.8 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | ERR2027233 | Sensitive | lineage4.1.2.1 | None | SRR3675230 | Other | lineage3;lineage4 | None | DRR184982 | Other | lineage2.2.1 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1180115 | Other | lineage4.9 | None | ERR2517457 | Sensitive | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR16278274 | Other | La1.4 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | ERR9117788 | Other | lineage3 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR1049023 | HR-TB | lineage4.9 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SRR1735598 | RR-TB | lineage4.9 | None |
|---|
