Rv0668 - c.-390T>C


Drug resistance types
38 Sensitive 53 RR-TB 68 HR-TB 64 MDR-TB 56 Pre-XDR-TB 2 XDR-TB 51 Other
lineage Counts
lineage Count
lineage3 31
lineage5.1.1 1
lineage2.2.1 59
lineage4.9 60
lineage4.3 2
lineage4.3.3 6
lineage2.2 24
lineage4.1.1.3 4
lineage4.3.2 3
lineage4.4.2 7
lineage2.2.2 21
23
lineage2.2.1.1 3
lineage4 14
lineage4;lineage2.2.2 1
lineage4.5 3
lineage2.2.2;lineage2.2.1 2
lineage4.9;lineage2 1
lineage4.6.1.2 5
lineage4.3.4.2.1 8
lineage4.1.2.1 7
lineage4.9;lineage2.2.1 1
lineage4.4.1.1;lineage4.1.2.1 1
La1.6 1
lineage3.1.1 4
La2 1
La1.4 1
lineage4.4 1
lineage4.4.1.2 1
lineage4.4.1.1 3
La1.8.1 2
lineage4.4.2;lineage4.2.2;lineage2.2.1 1
lineage4.8 6
lineage1.2.1.1 1
lineage3.1 1
lineage3.1.2.1 1
lineage4.3.2.1 1
lineage4.3.4.2 1
lineage4.6.3 1
lineage4.1.1.3.1 3
lineage4.8.2 1
lineage4.2.2.1 1
lineage1.2.1.2.1 1
lineage4.9;lineage4.2.1 1
lineage4.2.2.2 1
lineage4.2.1 3
lineage1.2.2.2 1
lineage1.1.2 1
lineage4.3.1.1 1
lineage4.7 1
lineage4.6.1.1 1
lineage4.9;La1.3 1
La1 1
spoligotype Counts
spoligotype Count
None 332
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR9117788 Other lineage3 None
ERR751330 MDR-TB lineage5.1.1 None
ERR9029360 MDR-TB lineage2.2.1 None
ERR751317 Sensitive lineage4.9 None
ERR773806 Sensitive lineage2.2.1 None
ERR9117760 HR-TB lineage4.3 None
ERR9119101 Sensitive lineage4.3.3 None
SRR1013553 Pre-XDR-TB lineage2.2 None
ERR9119098 Sensitive lineage4.3.3 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR9992879 XDR-TB lineage4.3.3 None
ERR9120012 MDR-TB lineage4.3.2 None
ERR9120013 MDR-TB lineage4.3.2 None
SRR1013565 Pre-XDR-TB lineage4.4.2 None
SRR1013554 Pre-XDR-TB lineage2.2 None
SRR1013581 Pre-XDR-TB lineage2.2 None
SRR1013568 Pre-XDR-TB lineage2.2 None
SRR1013567 Pre-XDR-TB lineage2.2.2 None
SRR1013570 Pre-XDR-TB lineage2.2.1 None
SRR1013577 MDR-TB lineage2.2 None
SRR1013566 Pre-XDR-TB lineage4.4.2 None
SRR1013569 Pre-XDR-TB lineage2.2.1 None
SRR1013578 MDR-TB lineage2.2 None
SRR1013597 HR-TB lineage2.2 None
SRR1013583 HR-TB lineage2.2 None
SRR1013584 HR-TB lineage2.2 None
SRR1013590 HR-TB lineage2.2.1 None
SRR1013596 HR-TB lineage3 None
SRR1013582 Pre-XDR-TB lineage2.2.1 None
SRR1013589 HR-TB lineage2.2.1 None
SRR1013595 HR-TB lineage3 None
SRR1013601 HR-TB lineage2.2.1 None
SRR1013599 HR-TB None
SRR1013598 HR-TB None
SRR1013600 HR-TB lineage2.2.1.1 None
SRR1013603 HR-TB lineage2.2.1 None
SRR1013607 HR-TB lineage2.2 None
SRR1013608 HR-TB lineage2.2 None
SRR1013602 HR-TB lineage2.2.1 None
SRR1013609 HR-TB lineage4 None
SRR1013611 HR-TB lineage4 None
SRR1013610 HR-TB lineage4 None
SRR1013613 HR-TB lineage2.2.1 None
SRR1013604 HR-TB lineage2.2.1 None
SRR1013614 HR-TB lineage2.2 None
SRR1013618 MDR-TB None
SRR1013612 HR-TB lineage4 None
SRR1013617 MDR-TB None
SRR1013621 Pre-XDR-TB lineage2.2 None
SRR10315556 Sensitive lineage2.2.1 None
SRR1013629 Pre-XDR-TB lineage2.2 None
SRR1013633 MDR-TB lineage2.2 None
SRR1013622 Pre-XDR-TB lineage2.2 None
SRR1013630 Pre-XDR-TB lineage2.2 None
SRR1013634 MDR-TB lineage2.2 None
SRR1047993 HR-TB lineage2.2.1 None
SRR10315579 Other lineage2.2.1.1 None
SRR1048867 Pre-XDR-TB lineage2.2.2 None
SRR1048852 Pre-XDR-TB lineage4.9 None
SRR1047996 MDR-TB lineage2.2.2 None
SRR1048853 Pre-XDR-TB lineage4;lineage2.2.2 None
SRR1048866 Pre-XDR-TB lineage4.4.2 None
SRR1048865 Pre-XDR-TB lineage4.4.2 None
SRR1048869 Pre-XDR-TB lineage2.2.2 None
SRR1048868 Pre-XDR-TB lineage2.2.2 None
SRR1048966 Pre-XDR-TB lineage2.2.1 None
SRR1048870 Pre-XDR-TB lineage2.2 None
SRR1048886 MDR-TB lineage2.2 None
SRR1048965 Pre-XDR-TB lineage2.2.1 None
SRR1048885 MDR-TB None
SRR1048985 HR-TB lineage2.2.1 None
SRR1048974 HR-TB lineage2.2.1 None
SRR1048982 HR-TB None
SRR1048988 HR-TB lineage2.2 None
SRR1048987 HR-TB lineage2.2.1 None
SRR1048992 HR-TB lineage2.2.2 None
SRR1048995 HR-TB lineage4.5 None
SRR1048968 HR-TB lineage2.2.2;lineage2.2.1 None
SRR1048969 MDR-TB lineage2.2.2 None
SRR1048975 HR-TB lineage2.2.1 None
SRR1048980 HR-TB lineage3 None
SRR1048983 HR-TB None
SRR1048986 HR-TB lineage2.2.1 None
SRR1048991 HR-TB lineage2.2.2 None
SRR1048993 HR-TB lineage4.9 None
SRR1048994 HR-TB lineage4.9 None
SRR1048996 HR-TB lineage4.5 None
SRR1048997 HR-TB lineage2.2.1 None
SRR1048998 HR-TB lineage2.2.1 None
SRR1049004 MDR-TB lineage2.2.2 None
SRR1049022 HR-TB lineage4.9;lineage2 None
SRR1049006 MDR-TB lineage2.2.2 None
SRR1049007 Pre-XDR-TB lineage2.2.2 None
SRR1049005 MDR-TB lineage2.2.2 None
SRR1049027 Pre-XDR-TB None
SRR1049023 HR-TB lineage2.2 None
SRR1049026 Pre-XDR-TB None
SRR1049581 MDR-TB lineage4.6.1.2 None
SRR1049040 MDR-TB lineage2.2.1 None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
SRR1049041 MDR-TB None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
SRR1049672 Other lineage3 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR1062918 Pre-XDR-TB lineage3 None
SRR1049725 RR-TB lineage4.1.2.1 None
SRR1062867 RR-TB lineage4.9;lineage2.2.1 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1049726 MDR-TB lineage4.4.1.1;lineage4.1.2.1 None
SRR1062871 MDR-TB lineage4.3.4.2.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR1062928 RR-TB lineage4 None
SRR10869071 MDR-TB lineage2.2.1 None
SRR10993951 RR-TB La1.6 None
SRR1140716 Pre-XDR-TB lineage3 None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR1140753 MDR-TB lineage4.3.4.2.1 None
SRR1140736 RR-TB None
SRR1144809 HR-TB lineage2.2.1 None
SRR1144744 HR-TB lineage2.2.1 None
SRR1144759 MDR-TB lineage2.2 None
SRR1172066 Sensitive lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1172938 MDR-TB lineage3 None
SRR1173014 MDR-TB lineage3 None
SRR1173281 RR-TB lineage3 None
SRR1173170 Other lineage4.9 None
SRR1173310 MDR-TB None
SRR1173621 MDR-TB lineage3 None
SRR1173416 Other lineage4.9 None
SRR1173770 Other lineage4.9 None
SRR1173720 Other lineage4.9 None
SRR1173740 Other None
SRR1173719 HR-TB lineage3 None
SRR1175131 Sensitive lineage2.2.1 None
SRR1175052 HR-TB lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175491 MDR-TB lineage4 None
SRR1175472 MDR-TB lineage4 None
SRR1175474 HR-TB lineage4.9 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR1180440 Other lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1181250 Other lineage4.9 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR12006056 Sensitive lineage4.9 None
SRR14801652 MDR-TB lineage4.3.3 None
SRR13888750 Other La2 None
SRR15315871 Sensitive lineage4.9 None
SRR16278274 Other La1.4 None
SRR16156804 RR-TB lineage4.9 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR1735596 RR-TB lineage4.9 None
SRR16627752 RR-TB lineage4.4 None
SRR17567887 Sensitive lineage4.4.1.2 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR17567930 Other lineage4.4.1.1 None
SRR1792022 Other La1.8.1 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002873 Pre-XDR-TB lineage4.4.2;lineage4.2.2;lineage2.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR18002976 Other lineage2.2.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18213736 MDR-TB lineage3 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18003042 Other lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR19303931 Other lineage2.2.1 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR19303820 RR-TB lineage4.8 None
SRR3105762 HR-TB None
SAMN02360583 HR-TB lineage2.2.2 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SRR3675230 RR-TB lineage3 None
ERR2446544 Sensitive lineage3 nl
ERR4815079 RR-TB lineage3 None
ERR4813263 MDR-TB lineage4.8 None
ERR4815556 RR-TB lineage3 None
SAMN02599067 Sensitive lineage2.2.1 None
SRR3675509 Other lineage4.9 None
SAMN02360581 HR-TB lineage2.2.1 None
ERR4815909 Other lineage4.8 None
ERR2027233 RR-TB lineage4.1.2.1 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR2027257 Other lineage4.1.2.1 None
SAMN02360556 Pre-XDR-TB lineage2.2.2 None
ERR2027290 RR-TB lineage3.1 None
SRR3675552 RR-TB lineage4.9 None
ERR212138 HR-TB lineage4 None
ERR4817069 RR-TB None
ERR3275548 Sensitive lineage3 nl
ERR2229198 MDR-TB lineage4.8 None
ERR4817131 Pre-XDR-TB None
SAMN02360571 HR-TB lineage2.2.2;lineage2.2.1 None
SAMN02360586 HR-TB lineage2.2.1 None
ERR4816717 RR-TB lineage3.1.2.1 None
SAMN02360590 MDR-TB lineage2.2.2 None
ERR2229791 RR-TB lineage4.9 None
ERR4816756 RR-TB None
ERR4816729 Sensitive lineage4.9 None
ERR4816745 Pre-XDR-TB lineage2.2.1 None
SAMN02599089 MDR-TB lineage3 None
SRR4034391 MDR-TB lineage4.1.2.1 None
SRR4033434 Sensitive lineage4.3.2.1 None
ERR4817292 Sensitive lineage4.3.4.2.1 None
SAMN02380982 MDR-TB lineage4.3.4.2 None
SAMN02360570 Pre-XDR-TB lineage2.2.1 None
SAMN02360595 Pre-XDR-TB lineage2.2.2 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
SAMN02360562 Pre-XDR-TB lineage4.4.2 None
SAMN02398710 MDR-TB lineage2.2.2 None
ERR4817915 RR-TB lineage4.9 None
SAMN02360574 HR-TB lineage2.2.1 None
SAMN02360591 Pre-XDR-TB lineage2.2.2 None
SAMN02360580 HR-TB lineage2.2.1 None
ERR2513229 MDR-TB lineage2.2.1 None
ERR2446413 Sensitive lineage4.6.3 None
SRR5007170 RR-TB lineage4.9 None
SRR5007161 RR-TB lineage4.1.1.3.1 None
ERR3276170 Other lineage4.1.2.1 nl
SAMN02360577 HR-TB lineage3 None
SRR5007165 MDR-TB lineage3 None
SRR5007167 RR-TB lineage4.1.1.3.1 None
SRR5007169 RR-TB lineage4.8.2 None
ERR4817547 Other lineage4.2.2.1 None
ERR2513830 RR-TB lineage4.8 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
ERR4817584 MDR-TB lineage3 None
ERR2446154 Sensitive lineage4.4.1.1 nl
ERR2514181 Other lineage1.2.1.2.1 None
ERR4819430 Sensitive lineage4.1.2.1 None
SAMN02360564 Pre-XDR-TB lineage2.2.1 None
SAMN02360563 Pre-XDR-TB lineage2.2.2 None
ERR4819383 RR-TB lineage4.9 None
ERR3275615 Sensitive lineage4.4.1.1 nl
ERR4819910 Other lineage4.9 None
ERR4820394 Other lineage4.3.4.2.1 None
ERR4819863 RR-TB lineage4.9 None
ERR4820833 HR-TB None
ERR4820107 RR-TB None
ERR4820030 Other lineage4.9 None
ERR2517457 Sensitive lineage3 None
SAMN02360585 HR-TB lineage4.5 None
SAMN02360579 HR-TB lineage2.2.1.1 None
ERR4821811 RR-TB lineage4.9 None
SRR6045516 Other lineage3.1.1 None
ERR4821747 MDR-TB lineage4.9;lineage4.2.1 None
ERR2747607 Sensitive lineage4.9 None
ERR4821172 RR-TB lineage4.9 None
SRR6045519 HR-TB None
SRR6046117 RR-TB lineage4.9 None
ERR4821214 RR-TB None
ERR4821272 RR-TB lineage4.1.2.1 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6045664 Other lineage4.2.1 None
SRR6045909 Other lineage4.8 None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR5818672 Other lineage1.2.2.2 None
SRR6046275 Other lineage3.1.1 None
SRR6045928 Other lineage4.9 None
SRR6045957 Other lineage4.9 None
SRR6044983 Other lineage3.1.1 None
SRR6046020 Other lineage3 None
SRR6045424 Other lineage1.1.2 None
SRR6044936 Other lineage4 None
SRR6044952 RR-TB lineage4.9 None
SRR6046609 Sensitive lineage4.9 None
SRR6046291 Other lineage3 None
SRR6046397 Other None
ERR4829238 Sensitive lineage3 None
ERR502474 Pre-XDR-TB lineage4.9 None
SRR6046834 Sensitive lineage4.9 None
SRR6046616 Other lineage4.3.1.1 None
SRR6046815 Other lineage3 None
ERR502470 RR-TB lineage4.9 None
ERR502473 Pre-XDR-TB lineage4.9 None
ERR502481 Pre-XDR-TB lineage4.9 None
ERR502478 RR-TB lineage4.9 None
ERR502479 RR-TB lineage4.9 None
SRR7645928 RR-TB lineage4.7 None
SRR7131160 Sensitive lineage3 None
SRR7535047 RR-TB lineage4.6.1.1 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7645906 Other lineage2.2.1 None
ERR4872269 XDR-TB lineage2.2.1 None
SRR6982239 HR-TB lineage4.1.1.3 None
SRR6896576 Other lineage2.2.1 None
ERR323035 Sensitive lineage4.9 None
ERR3275941 RR-TB lineage4.3 nl
SRR7585435 Other lineage4.9 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
SRR8651633 Pre-XDR-TB lineage4.4.2 None
SRR7755649 MDR-TB lineage4.2.1 None
DRR184982 RR-TB lineage2.2.1 None
ERR323068 Sensitive lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323048 Pre-XDR-TB lineage4.9 None
ERR1023494 Sensitive lineage3 None
ERR10796627 Other lineage4 None
ERR1023525 HR-TB lineage4 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796594 Other lineage4.9 None
ERR10796598 RR-TB lineage4.9 None
ERR10796558 Sensitive lineage4 None
ERR3283006 RR-TB lineage4.9 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR4769493 Pre-XDR-TB lineage4.9;La1.3 None
ERR3283013 MDR-TB lineage4 None
ERR3283049 Sensitive lineage4.9 None
ERR3797062 RR-TB lineage4.9 None
ERR405190 Sensitive lineage4.9 None
ERR3439489 RR-TB La1.8.1 None
ERR3797084 Sensitive lineage4.9 None
ERR405191 Other lineage4.9 None
ERR405209 Sensitive lineage4 None
ERR4769472 Other lineage4.9 None
ERR5908213 Sensitive lineage4.3.3 None
ERR4798262 HR-TB La1 None
ERR5865378 Pre-XDR-TB lineage2.2.1 None
ERR4796577 MDR-TB None
ERR4797141 Sensitive lineage3 None
ERR4810624 HR-TB lineage2.2 None
ERR5908229 Sensitive lineage4.3.3 None
ERR5987249 MDR-TB lineage4.3.2 None
ERR5917985 MDR-TB lineage2.2.1 None