lineage | Count |
---|---|
lineage4.9 | 60 |
lineage3 | 29 |
23 | |
lineage4 | 14 |
lineage4.9;La1.3 | 1 |
lineage2.2.1 | 59 |
La1 | 1 |
lineage2.2 | 24 |
lineage4.3.2 | 3 |
lineage4.3.3 | 6 |
lineage5.1.1 | 1 |
lineage4.3 | 2 |
lineage4.1.1.3 | 4 |
lineage4.4.2 | 7 |
lineage2.2.2 | 21 |
lineage2.2.1.1 | 3 |
lineage4;lineage2.2.2 | 1 |
lineage2.2.2;lineage2.2.1 | 2 |
lineage4.5 | 3 |
lineage4.9;lineage2 | 1 |
lineage4.6.1.2 | 5 |
lineage4.3.4.2.1 | 8 |
lineage4.9;lineage2.2.1 | 1 |
lineage4.1.2.1 | 7 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
La1.6 | 1 |
lineage3.1.1 | 4 |
La2 | 1 |
La1.4 | 1 |
lineage4.4.1.2 | 1 |
lineage4.4 | 1 |
lineage4.4.2;lineage4.2.2;lineage2.2.1 | 1 |
lineage4.4.1.1 | 3 |
La1.8.1 | 2 |
lineage4.8 | 6 |
lineage1.2.1.1 | 1 |
lineage3.1 | 1 |
lineage3.1.2.1 | 1 |
lineage4.3.2.1 | 1 |
lineage4.3.4.2 | 1 |
lineage4.2.2.1 | 1 |
lineage4.6.3 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage1.2.1.2.1 | 1 |
lineage1.2.2.2 | 1 |
lineage4.2.1 | 3 |
lineage4.2.2.2 | 1 |
lineage4.9;lineage4.2.1 | 1 |
lineage1.1.2 | 1 |
lineage4.3.1.1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 330 |
ID | Drug resistance | Lineage | Country iso2 | ERR3797062 | RR-TB | lineage4.9 | None | ERR405191 | Other | lineage4.9 | None | ERR3797084 | Sensitive | lineage4.9 | None | ERR4797141 | Sensitive | lineage3 | None | ERR4769472 | Other | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR405190 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR5865378 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR5987249 | MDR-TB | lineage4.3.2 | None | ERR5908213 | Sensitive | lineage4.3.3 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9119098 | Sensitive | lineage4.3.3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9119101 | Sensitive | lineage4.3.3 | None | ERR9117788 | Other | lineage3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9120012 | MDR-TB | lineage4.3.2 | None | ERR9120013 | MDR-TB | lineage4.3.2 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013599 | HR-TB | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013598 | HR-TB | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013618 | MDR-TB | None | SRR1013617 | MDR-TB | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | MDR-TB | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048983 | HR-TB | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049041 | MDR-TB | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1140736 | RR-TB | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1172066 | Sensitive | lineage4.9 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1173621 | MDR-TB | lineage3 | None | SRR1172938 | MDR-TB | lineage3 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173416 | Other | lineage4.9 | None | SRR1173014 | MDR-TB | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173720 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175131 | Sensitive | lineage2.2.1 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR12006056 | Sensitive | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR13888750 | Other | La2 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR16278274 | Other | La1.4 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002873 | Pre-XDR-TB | lineage4.4.2;lineage4.2.2;lineage2.2.1 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR3105762 | HR-TB | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4815909 | Other | lineage4.8 | None | SRR3675509 | Other | lineage4.9 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR212138 | HR-TB | lineage4 | None | SAMN02599067 | Sensitive | lineage2.2.1 | None | ERR4817069 | RR-TB | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817131 | Pre-XDR-TB | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816756 | RR-TB | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | SRR4033434 | Sensitive | lineage4.3.2.1 | None | SAMN02599089 | MDR-TB | lineage3 | None | ERR4817292 | Sensitive | lineage4.3.4.2.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR4817547 | Other | lineage4.2.2.1 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SAMN02360577 | HR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR5007165 | MDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4819910 | Other | lineage4.9 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820394 | Other | lineage4.3.4.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2513830 | RR-TB | lineage4.8 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR2517457 | Sensitive | lineage3 | None | ERR4820833 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | ERR4820107 | RR-TB | None | SAMN02360585 | HR-TB | lineage4.5 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR2747607 | Sensitive | lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR6046117 | RR-TB | lineage4.9 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045519 | HR-TB | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044936 | Other | lineage4 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046397 | Other | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046291 | Other | lineage3 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046834 | Sensitive | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046609 | Sensitive | lineage4.9 | None | SRR6046815 | Other | lineage3 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | SRR6896576 | Other | lineage2.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR7585435 | Other | lineage4.9 | None | SRR7131160 | Sensitive | lineage3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR7645906 | Other | lineage2.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323068 | Sensitive | lineage4.9 | None | ERR10796558 | Sensitive | lineage4 | None | ERR1023494 | Sensitive | lineage3 | None | ERR1023525 | HR-TB | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796627 | Other | lineage4 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283049 | Sensitive | lineage4.9 | None |
---|