Rv0668 - c.1323C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
69 Sensitive
8 RR-TB
10 HR-TB
12 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
54 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.9 | 65 |
| lineage2.2.1 | 12 |
| lineage4.1.1.3 | 4 |
| lineage3 | 5 |
| lineage2.2.1.2 | 2 |
| lineage4.8 | 3 |
| lineage4.8.1 | 1 |
| lineage4.3.3 | 6 |
| M.canetti;lineage4.9 | 1 |
| La1.8.1 | 3 |
| lineage4.1.2.1 | 5 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;lineage4.9 | 6 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage3;lineage4 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4 | 4 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.3.2 | 1 |
| 1 | |
| lineage5.1.4 | 1 |
| lineage4.5 | 1 |
| lineage3.1.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3 | 1 |
| La1.3 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage3.1.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 159 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR5979407 | Other | lineage3 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4821276 | Sensitive | lineage3 | None | ERR4829208 | Other | lineage4.8 | None | SRR3675318 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR5311077 | Other | La1.8.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR4820265 | Other | lineage4.1.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4820151 | Other | lineage4.8 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR7131123 | Other | lineage4.8 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR037504 | Other | lineage4.9.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR6981999 | Sensitive | lineage2.2.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4829333 | Other | lineage4 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR1792011 | Other | La1.8.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4818407 | Other | lineage4.3.2 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR2517475 | Other | lineage4 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675547 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR038289 | Other | lineage4.3.3 | None | SRR16156775 | Other | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797085 | Other | lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR29126964 | Sensitive | lineage4.1.2.1 | None | ERR2446382 | Other | lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR4769552 | Sensitive | La1.3 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675247 | Other | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR7236330 | Other | La1.8.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR3275450 | Other | lineage4 | None | SRR3675522 | Other | lineage4.9 | None |
|---|
