TB-Profiler result

Run: ERR4818393
Summary

Run ID: ERR4818393

Sample name:

Date: 01-04-2023 15:31:54

Number of reads: 301760

Percentage reads mapped: 32.77

Strain: lineage3

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.8 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.22 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5466 p.Glu76Gly missense_variant 0.5
gyrB 6170 p.His311Thr missense_variant 0.5
gyrB 6175 c.936G>A synonymous_variant 0.5
gyrB 6183 p.Thr315Met missense_variant 0.5
gyrB 6190 c.951A>G synonymous_variant 0.5
gyrB 6196 c.957C>T synonymous_variant 0.5
gyrB 6204 p.Ser322Thr missense_variant 0.5
gyrB 6211 c.972G>C synonymous_variant 0.5
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8453 c.1152A>C synonymous_variant 0.67
gyrA 8462 c.1161A>T synonymous_variant 0.67
gyrA 8465 c.1164C>G synonymous_variant 0.67
gyrA 8471 c.1170T>C synonymous_variant 0.67
gyrA 8472 c.1171C>T synonymous_variant 0.67
gyrA 8480 c.1179C>T synonymous_variant 0.67
gyrA 8486 c.1185T>C synonymous_variant 0.67
gyrA 8516 c.1215T>C synonymous_variant 0.5
gyrA 8519 c.1218A>C synonymous_variant 0.5
gyrA 8520 c.1219C>T synonymous_variant 0.5
gyrA 8528 c.1227G>C synonymous_variant 0.4
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 761030 c.1224G>C synonymous_variant 0.4
rpoB 761037 c.1231T>C synonymous_variant 0.4
rpoB 761051 c.1245G>C synonymous_variant 0.5
rpoB 761054 c.1248G>C synonymous_variant 0.5
rpoB 761057 c.1251G>C synonymous_variant 0.5
rpoB 761060 c.1254C>G synonymous_variant 0.56
rpoB 761084 c.1278C>A synonymous_variant 0.65
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.69
rpoB 761096 c.1290G>C synonymous_variant 0.73
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.73
rpoB 761102 c.1296A>G synonymous_variant 0.73
rpoB 761126 c.1320G>C synonymous_variant 0.18
rpoB 761132 c.1326G>C synonymous_variant 0.78
rpoB 761133 c.1327T>C synonymous_variant 0.78
rpoB 761147 c.1341C>T synonymous_variant 0.38
rpoB 761150 c.1344A>C synonymous_variant 0.75
rpoB 761159 c.1353G>C synonymous_variant 0.67
rpoB 761165 c.1359G>C synonymous_variant 0.67
rpoB 761573 c.1767C>G synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 1.0
rpoB 761606 c.1800C>G synonymous_variant 0.67
rpoB 762024 p.Val740Ile missense_variant 0.43
rpoB 762051 p.His749Tyr missense_variant 0.45
rpoB 762057 p.Ile751Val missense_variant 0.42
rpoB 762062 c.2256T>C synonymous_variant 0.38
rpoB 762065 c.2259T>C synonymous_variant 0.36
rpoB 762071 p.Asp755Glu missense_variant 0.33
rpoB 762080 c.2274G>C synonymous_variant 0.35
rpoB 762085 p.Ala760Glu missense_variant 0.35
rpoB 762089 c.2283G>A synonymous_variant 0.35
rpoB 762110 c.2304G>C synonymous_variant 0.4
rpoB 762114 p.Ile770Val missense_variant 0.31
rpoB 762122 p.Asp772Glu missense_variant 0.18
rpoB 762143 c.2337T>C synonymous_variant 0.27
rpoB 762149 c.2343G>C synonymous_variant 0.3
rpoB 762156 p.Val784Ile missense_variant 0.33
rpoB 762167 c.2361T>C synonymous_variant 0.25
rpoB 762176 c.2370T>C synonymous_variant 0.4
rpoB 762177 p.Arg791Thr missense_variant 0.4
rpoB 762181 p.Asp792Ala missense_variant 0.5
rpoB 762185 c.2379G>C synonymous_variant 0.5
rpoB 762194 c.2388G>C synonymous_variant 0.67
rpoB 762200 c.2394C>T synonymous_variant 0.44
rpoB 762212 c.2406G>C synonymous_variant 0.57
rpoB 762218 c.2412T>C synonymous_variant 0.57
rpoB 762233 c.2427G>C synonymous_variant 0.71
rpoB 762234 p.Pro810Ser missense_variant 0.68
rpoB 762239 c.2433G>A synonymous_variant 0.7
rpoB 762245 c.2439G>C synonymous_variant 0.7
rpoB 762254 c.2448T>C synonymous_variant 0.7
rpoB 762266 c.2460T>C synonymous_variant 0.25
rpoB 762293 c.2487T>C synonymous_variant 0.55
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoC 763022 c.-348C>A upstream_gene_variant 0.38
rpoC 763028 c.-342T>C upstream_gene_variant 0.44
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 0.73
rpoC 763043 c.-327G>C upstream_gene_variant 0.77
rpoC 763053 c.-317T>C upstream_gene_variant 0.76
rpoC 763070 c.-300T>C upstream_gene_variant 0.76
rpoB 763077 p.Val1091Ser missense_variant 0.76
rpoC 763103 c.-267G>C upstream_gene_variant 0.7
rpoC 763115 c.-255T>C upstream_gene_variant 0.58
rpoB 763119 p.Asn1105Asp missense_variant 0.58
rpoC 763127 c.-243G>C upstream_gene_variant 0.53
rpoC 763133 c.-237G>C upstream_gene_variant 0.55
rpoC 763148 c.-222G>C upstream_gene_variant 0.29
rpoC 763456 c.87A>G synonymous_variant 0.17
rpoC 763468 c.99G>C synonymous_variant 0.18
rpoC 763486 c.117T>C synonymous_variant 0.22
rpoC 763492 c.123G>C synonymous_variant 0.22
rpoC 763496 p.Lys43Arg missense_variant 0.22
rpoC 763511 p.Cys48Gly missense_variant 0.33
rpoC 763517 p.Lys50Gln missense_variant 0.43
rpoC 763528 c.159G>C synonymous_variant 0.5
rpoC 763531 c.162G>C synonymous_variant 0.5
rpoC 763534 c.165T>C synonymous_variant 0.5
rpoC 763555 c.186C>T synonymous_variant 0.67
rpoC 763666 c.297G>C synonymous_variant 0.4
rpoC 763675 c.306C>G synonymous_variant 0.56
rpoC 763699 c.330G>T synonymous_variant 0.72
rpoC 763708 c.339G>C synonymous_variant 0.72
rpoC 763714 c.345G>C synonymous_variant 0.67
rpoC 763717 c.348T>C synonymous_variant 0.67
rpoC 763718 p.Leu117Val missense_variant 0.67
rpoC 763723 c.354G>C synonymous_variant 0.67
rpoC 763724 p.Asp119Asn missense_variant 0.67
rpoC 763729 c.360G>C synonymous_variant 0.67
rpoC 763732 c.363C>G synonymous_variant 0.67
rpoC 763735 c.366G>C synonymous_variant 0.67
rpoC 763744 c.375G>C synonymous_variant 0.63
rpoC 763751 p.Ile128Val missense_variant 0.63
rpoC 763772 p.Val135Met missense_variant 0.59
rpoC 764458 c.1089G>C synonymous_variant 0.33
rpoC 764461 c.1092A>G synonymous_variant 0.56
rpoC 764485 c.1116G>C synonymous_variant 0.64
rpoC 764491 c.1122G>T synonymous_variant 0.64
rpoC 764497 c.1128A>G synonymous_variant 0.54
rpoC 764503 c.1134G>T synonymous_variant 0.87
rpoC 764509 c.1140G>C synonymous_variant 0.31
rpoC 764512 c.1143G>C synonymous_variant 0.9
rpoC 764521 c.1152T>C synonymous_variant 0.9
rpoC 764530 c.1161C>T synonymous_variant 0.57
rpoC 764536 c.1167G>C synonymous_variant 0.88
rpoC 764543 p.Thr392Ala missense_variant 0.84
rpoC 764548 c.1179G>T synonymous_variant 0.79
rpoC 764551 c.1182G>C synonymous_variant 0.33
rpoC 764573 p.Leu402Ile missense_variant 0.81
rpoC 764578 c.1209C>G synonymous_variant 0.81
rpoC 764581 c.1212T>C synonymous_variant 0.81
rpoC 764582 p.Leu405Met missense_variant 0.81
rpoC 764593 c.1224C>T synonymous_variant 0.39
rpoC 764602 c.1233C>T synonymous_variant 0.88
rpoC 764605 c.1236G>T synonymous_variant 0.87
rpoC 764611 c.1242G>T synonymous_variant 0.87
rpoC 764626 c.1257C>T synonymous_variant 0.23
rpoC 764632 c.1263T>A synonymous_variant 0.74
rpoC 764647 c.1278C>T synonymous_variant 0.72
rpoC 764650 c.1281G>T synonymous_variant 0.76
rpoC 764653 c.1284G>C synonymous_variant 0.78
rpoC 764656 c.1287C>T synonymous_variant 0.72
rpoC 764662 c.1293G>C synonymous_variant 0.72
rpoC 764677 c.1308C>A synonymous_variant 0.71
rpoC 764678 p.Lys437Gln missense_variant 0.75
rpoC 764683 c.1314G>C synonymous_variant 0.62
rpoC 764692 c.1323C>T synonymous_variant 0.69
rpoC 764809 c.1440C>T synonymous_variant 0.4
rpoC 767279 c.3912delC frameshift_variant 0.22
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781745 c.186G>A synonymous_variant 0.33
rpsL 781748 c.189C>G synonymous_variant 0.42
rpsL 781751 c.192G>C synonymous_variant 0.75
rpsL 781760 c.201T>C synonymous_variant 0.75
rpsL 781766 c.207C>T synonymous_variant 0.77
rpsL 781796 p.Met79Ile missense_variant 0.76
rpsL 781802 c.243G>C synonymous_variant 0.76
rpsL 781805 c.246G>T synonymous_variant 0.59
rpsL 781811 c.252C>T synonymous_variant 0.72
rpsL 781814 c.255C>T synonymous_variant 0.68
rpsL 781817 c.258G>T synonymous_variant 0.68
rpsL 781832 c.273T>C synonymous_variant 0.61
rpsL 781835 c.276T>C synonymous_variant 0.44
rpsL 781841 c.282C>T synonymous_variant 0.56
rpsL 781845 p.Lys96Arg missense_variant 0.38
rpsL 781851 p.Ile98Val missense_variant 0.36
rpsL 781868 c.309T>C synonymous_variant 0.27
rpsL 781871 c.312G>C synonymous_variant 0.27
rplC 800943 c.135C>T synonymous_variant 0.22
Rv1258c 1406530 p.Gly271Ser missense_variant 0.29
Rv1258c 1406935 p.Gly136Ser missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.98
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 1.0
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.98
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.97
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.9
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.87
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.98
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 1.0
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.67
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.57
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.63
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.62
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.62
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.31
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.65
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.67
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.64
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.37
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.47
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.42
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.34
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.71
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.83
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.83
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.44
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.18
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.61
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.25
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.63
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.3
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.21
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.24
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.21
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.77
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.2
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.16
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.96
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.89
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.95
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 0.83
rrs 1472875 n.1030T>C non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.96
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.97
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.97
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.98
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.99
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.95
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.95
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 1.0
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.89
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.96
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.83
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.17
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.63
rrs 1473122 n.1281delA non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1278A>T non_coding_transcript_exon_variant 1.0
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.96
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.99
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.99
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.95
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.94
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.93
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.91
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.91
rrs 1473294 n.1449A>G non_coding_transcript_exon_variant 0.93
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.9
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.91
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.96
rrl 1473384 n.-274A>G upstream_gene_variant 0.75
rrl 1473390 n.-268A>C upstream_gene_variant 0.67
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 1.0
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 1.0
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.93
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.93
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.12
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474326 n.669T>A non_coding_transcript_exon_variant 0.67
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.67
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474582 n.925T>C non_coding_transcript_exon_variant 0.4
rrl 1474615 n.958A>G non_coding_transcript_exon_variant 0.29
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>G non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474643 n.986A>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475109 n.1452C>T non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 1.0
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 1.0
rrl 1475767 n.2110_2111insT non_coding_transcript_exon_variant 0.93
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.84
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.79
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.36
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.79
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 1.0
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 1.0
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.71
rrl 1475974 n.2317A>G non_coding_transcript_exon_variant 0.33
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.6
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.5
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.5
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.5
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.5
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.5
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.98
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.98
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.92
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.92
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.97
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.88
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 1.0
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 1.0
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 1.0
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
rpsA 1833661 c.120A>G synonymous_variant 1.0
rpsA 1833667 c.126C>T synonymous_variant 1.0
rpsA 1833668 p.Ile43Val missense_variant 1.0
rpsA 1833676 c.135A>G synonymous_variant 1.0
rpsA 1833679 c.138G>C synonymous_variant 1.0
rpsA 1833684 p.Arg48His missense_variant 1.0
rpsA 1833694 c.153G>C synonymous_variant 0.71
rpsA 1833700 c.159C>T synonymous_variant 0.71
rpsA 1833721 c.180A>G synonymous_variant 0.71
rpsA 1833727 c.186G>C synonymous_variant 0.71
rpsA 1833732 p.Pro64Leu missense_variant 0.57
rpsA 1833734 p.Ala65Ser missense_variant 0.5
rpsA 1833742 c.201A>G synonymous_variant 0.5
rpsA 1833764 p.Asp75Asn missense_variant 0.67
rpsA 1834189 c.648G>C synonymous_variant 0.33
rpsA 1834195 c.654G>C synonymous_variant 0.64
rpsA 1834234 c.693G>C synonymous_variant 0.79
rpsA 1834240 c.699T>C synonymous_variant 0.88
rpsA 1834246 c.705G>T synonymous_variant 0.28
rpsA 1834249 c.708T>C synonymous_variant 0.93
rpsA 1834258 c.717G>A synonymous_variant 0.4
rpsA 1834261 c.720A>G synonymous_variant 0.93
rpsA 1834264 c.723G>C synonymous_variant 0.92
rpsA 1834294 c.753G>C synonymous_variant 0.92
rpsA 1834298 p.Gln253Glu missense_variant 0.92
rpsA 1834306 c.765T>C synonymous_variant 0.88
rpsA 1834307 p.Asp256Gln missense_variant 0.88
rpsA 1834312 c.771G>A synonymous_variant 0.88
rpsA 1834327 c.786G>T synonymous_variant 1.0
rpsA 1834345 c.804C>T synonymous_variant 0.9
rpsA 1834348 c.807T>C synonymous_variant 0.86
rpsA 1834354 c.813G>T synonymous_variant 0.8
rpsA 1834361 c.820T>C synonymous_variant 0.8
rpsA 1834600 c.1059G>C synonymous_variant 0.33
rpsA 1834606 c.1065C>T synonymous_variant 0.33
rpsA 1834609 c.1068T>C synonymous_variant 0.33
rpsA 1834612 c.1071G>C synonymous_variant 0.4
rpsA 1834618 c.1077G>C synonymous_variant 0.22
rpsA 1834619 c.1078T>C synonymous_variant 0.22
rpsA 1834624 c.1083G>C synonymous_variant 0.22
rpsA 1834633 c.1092A>G synonymous_variant 0.22
rpsA 1834639 c.1098T>C synonymous_variant 0.22
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2222758 p.Val136Ala missense_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
pepQ 2860006 p.Gly138Asp missense_variant 0.2
Rv2752c 3066050 p.Leu48Met missense_variant 0.33
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiB 3642163 p.Thr210Ser missense_variant 0.2
alr 3840230 c.1191T>C synonymous_variant 0.29
ddn 3986754 c.-90T>C upstream_gene_variant 0.18
clpC1 4038378 p.Thr776Ser missense_variant 0.22
clpC1 4039898 c.807C>G synonymous_variant 0.67
clpC1 4039994 p.Glu237Asp missense_variant 0.2
clpC1 4040009 c.696C>G synonymous_variant 0.23
clpC1 4040015 c.690G>T synonymous_variant 0.23
clpC1 4040018 c.687G>C synonymous_variant 0.23
clpC1 4040021 c.684A>C synonymous_variant 0.25
clpC1 4040024 c.681A>G synonymous_variant 0.23
clpC1 4040036 c.669C>G synonymous_variant 0.25
clpC1 4040042 c.663C>T synonymous_variant 0.25
clpC1 4040066 c.639G>C synonymous_variant 0.25
clpC1 4040081 c.624C>G synonymous_variant 0.27
clpC1 4040087 c.618G>C synonymous_variant 0.3
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242999 p.Ala1046Val missense_variant 0.33
embA 4246435 p.Gln1068Arg missense_variant 0.22
embB 4248193 c.1680C>A synonymous_variant 0.15
aftB 4268250 c.586delG frameshift_variant 0.22
ubiA 4269117 p.Glu239Asp missense_variant 0.29
whiB6 4338595 c.-75delG upstream_gene_variant 1.0