EBG00000313339 - n.2094C>A
Drug resistance types
17 Sensitive
54 RR-TB
10 HR-TB
37 MDR-TB
14 Pre-XDR-TB
1 XDR-TB
175 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4.1.2 | 2 |
| lineage4.3.3 | 13 |
| lineage4.3.4.1 | 2 |
| lineage2.2.1 | 42 |
| lineage4.8 | 66 |
| lineage1.2.1.1 | 2 |
| lineage4.9 | 21 |
| lineage4.1.2 | 4 |
| lineage4.3.4.2.1 | 2 |
| lineage4.2.1 | 4 |
| lineage4.3.1.1 | 5 |
| lineage4.1.1.3.1 | 2 |
| lineage3;lineage4 | 2 |
| lineage4.4.1.1 | 7 |
| lineage1.2.2.2 | 5 |
| lineage4.2.2.2 | 7 |
| lineage3.1.1 | 5 |
| lineage4.1.1.1 | 7 |
| lineage4.1.2.1 | 13 |
| lineage4.3.2.1 | 2 |
| lineage4.3.4.1;lineage4.9 | 2 |
| lineage1.1.2 | 3 |
| lineage3 | 24 |
| lineage4.7 | 2 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.4.1.1.1 | 5 |
| lineage4.6.2.2 | 2 |
| lineage4.2.2 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage2.2.2 | 2 |
| lineage4.1.1.3 | 7 |
| lineage3.1.2 | 1 |
| 1 | |
| lineage4.8.1 | 4 |
| lineage2.2.1.1 | 3 |
| lineage3.1.2.1 | 4 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.1.3.1 | 3 |
| lineage4 | 2 |
| lineage6.1.3 | 1 |
| lineage4.3.4.2 | 2 |
| La1.8.1 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.3 | 1 |
| lineage4.3.1 | 1 |
| lineage4.8.2 | 1 |
| lineage4.4.2 | 2 |
| lineage4.1.3 | 1 |
| lineage4.6 | 1 |
| lineage4.5 | 2 |
| lineage1.1.3.2 | 1 |
| lineage6.1.2 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage1.2.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 308 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6397733 | Other | lineage4.4.1.2 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR10796562 | Other | lineage4.3.4.1 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR978761 | Other | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR10796565 | Other | lineage4.9 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR11342669 | Other | lineage4.8 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR6045664 | Other | lineage4.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR2600609 | Other | lineage4.8 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR7069784 | Other | lineage1.2.2.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | SRR7070535 | HR-TB | lineage4.1.2.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR10315696 | Sensitive | lineage4.3.2.1 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR7069193 | Other | lineage4.3.1.1 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | ERR867572 | Other | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR7069030 | Other | lineage3 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9117788 | Other | lineage3 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | SRR6046064 | Other | lineage3 | gb | SRR6046848 | Other | lineage4.6.5 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR2027230 | Other | lineage4.2.2.2 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | SRR7069648 | Other | lineage4.6.2.2 | None | SRR14179705 | Pre-XDR-TB | lineage3 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR11349153 | RR-TB | lineage4.1.1.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR4820922 | Other | lineage4.1.2.1 | gb | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR867571 | Other | lineage4.9 | None | SRR7069074 | Other | lineage3 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | DRR034348 | Other | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR2027250 | Other | lineage3.1.2 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR18003023 | Other | lineage2.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR4817060 | Other | None | SRR11342646 | HR-TB | lineage3 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR978694 | Other | lineage4.8 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6398013 | Sensitive | lineage4.1.2 | ca | SRR18002981 | Other | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR978727 | Other | lineage4.8 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069097 | Other | lineage3.1.2.1 | None | SRR7069314 | Other | lineage3 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR978751 | Other | lineage4.8 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR5007165 | Other | lineage3 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR7070223 | HR-TB | lineage3 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | ERR4819772 | Other | lineage1.1.3.1 | None | ERR4818180 | Other | lineage4.8 | gb | ERR4816800 | Other | lineage4.8 | gb | ERR2229436 | Other | lineage4.8 | None | SRR3675565 | Other | lineage4 | None | ERR10796640 | Other | lineage4.1.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | SRR18213721 | Other | lineage4.8 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SRR7069954 | Other | lineage1.2.2.2 | None | SRR7070461 | Other | lineage3 | None | SRR3675552 | Other | lineage4.9 | None | SRR6046117 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | SRR7069518 | Other | lineage4.8 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR7070080 | Pre-XDR-TB | lineage3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR11349172 | RR-TB | lineage4.3.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | ERR867575 | Other | lineage4.9 | None | SRR7070369 | Other | lineage1.2.2.2 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR978762 | Other | lineage4.8 | None | ERR978748 | Other | lineage4.8 | None | ERR5087596 | Other | La1.8.1 | None | SRR7069082 | Other | lineage4.1.2.1 | None | SRR15276982 | XDR-TB | lineage3 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR6046020 | Other | lineage3 | None | ERR978693 | Other | lineage4.8 | None | ERR911930 | Other | lineage4.8 | None | ERR2512423 | Other | lineage4.1.1.3 | None | SRR19303876 | Other | lineage4.7 | None | SRR7070479 | Other | lineage4.1.2 | None | ERR4822150 | Other | lineage4.8 | gb | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR3675509 | Other | lineage4.9 | None | SRR7069137 | Other | lineage4.8 | None | SRR7070087 | Other | lineage4.8.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796593 | Other | lineage4.3 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR2228900 | Other | lineage4.8 | None | SRR6044904 | Other | lineage3 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR9971144 | RR-TB | lineage2.2.1 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4819324 | Other | lineage4.8 | gb | SRR11342676 | HR-TB | lineage4.6.2.2 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR7070515 | Other | lineage1.1.3.1 | None | SRR7131122 | Other | lineage2.2.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR978754 | RR-TB | lineage4.8 | None | ERR4819166 | Other | lineage3 | gb | ERR10796636 | Other | lineage4.1.2.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR6046291 | Other | lineage3 | None | SRR6046766 | Other | lineage3.1.1 | None | ERR10796635 | Other | lineage4.8 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR5818672 | Other | lineage1.2.2.2 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR10796599 | Other | lineage4.8 | None | ERR4821325 | Other | lineage3 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR867544 | Other | lineage4.9 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | SRR18213736 | Other | lineage3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR6044936 | Other | lineage4.6 | None | ERR2514173 | Other | lineage4.5 | gb | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR6045424 | Other | lineage1.1.2 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR5818572 | Sensitive | lineage4.2.2.2 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR7069931 | Other | lineage4.2.2.2 | None | SRR6046815 | Other | lineage3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR6045957 | Other | lineage4.9 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR7070320 | Other | lineage4.8 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | ERR978752 | Other | lineage4.8 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR867574 | Other | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR867567 | RR-TB | lineage3 | None | SRR18002976 | Other | lineage2.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR19304094 | Other | lineage6.1.2 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6044841 | Other | lineage4.9 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR5818612 | Other | lineage4.2.2.2 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR7070419 | Other | lineage3 | None | ERR10796580 | Other | lineage4 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR7069319 | Other | lineage4.5 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR978747 | Other | lineage4.8 | None | SRR6045705 | Other | lineage4.9 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR911929 | Other | lineage4.8 | None | SRR18002961 | Other | lineage2.2.1 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978735 | Other | lineage4.8 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR10796598 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR7069027 | MDR-TB | lineage4.3.4.2 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR10796576 | Sensitive | lineage4.9 | None | ERR10796577 | Other | lineage4.9 | None | SRR6153150 | Other | lineage3.1.1 | None | SRR19241806 | Sensitive | lineage4.1.2.1 | None | SRR11342695 | MDR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR7069839 | Other | lineage4.8 | None | SRR6045778 | Other | lineage3.1 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR9971223 | Other | lineage2.2.1 | None | ERR978750 | RR-TB | lineage4.8 | None |
|---|
