Rv0668 - c.1212T>C
Drug resistance types
33 Sensitive
99 RR-TB
53 HR-TB
155 MDR-TB
27 Pre-XDR-TB
4 XDR-TB
215 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 96 |
| lineage4.1.1.3 | 7 |
| lineage4.8 | 21 |
| lineage4.6.1.1 | 9 |
| lineage4 | 4 |
| lineage4.1.1.1 | 5 |
| M.canetti | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.6;La3;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.4.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 24 |
| lineage4.2.1 | 8 |
| lineage4.2.2.2 | 3 |
| lineage4.3.3 | 11 |
| lineage3 | 25 |
| lineage4.3.4.2 | 1 |
| lineage4.6.2.2 | 4 |
| lineage2.1;lineage4.9 | 14 |
| La1.8.1 | 10 |
| lineage4.5 | 2 |
| La2 | 1 |
| lineage5.1.1 | 2 |
| lineage4.3.4.2.1 | 12 |
| lineage4.3.2.1 | 4 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage2.2.1 | 53 |
| lineage4.1.2.1 | 26 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage1.1.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La1.3 | 3 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.2 | 1 |
| lineage4.4.1.1.1 | 3 |
| lineage3.1.1 | 4 |
| lineage4.3.3;lineage4.9 | 1 |
| La1.7.X-unk4 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1 | 1 |
| lineage4.3.4.1 | 4 |
| lineage2.1;lineage4.3.2 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.2 | 5 |
| M.canetti;lineage4.9 | 3 |
| lineage4.8.1 | 4 |
| lineage1.1.1.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage2.1 | 2 |
| lineage4.4.1.1 | 7 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage1.1.3.1 | 1 |
| lineage4.1.3 | 3 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage1.2.1.2.1 | 1 |
| lineage4.6.1.2 | 8 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage4.7 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage1.2.1.2 | 1 |
| lineage3;lineage4 | 2 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1;lineage4.8 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage2.2.2 | 5 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.3.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage4.1.2.1.1 | 1 |
| La1.7 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage4.4.1.2 | 1 |
| La3;lineage4.8 | 2 |
| M.canetti;lineage2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| lineage2;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| 18 | |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1.1.2;lineage4 | 1 |
| La1.2.BCG | 1 |
| lineage4.9;lineage6.3 | 3 |
| lineage4.1.1.3.1 | 3 |
| lineage1.1.2 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La3;lineage4.9 | 1 |
| La3;lineage1.1.2 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage4.6.5 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage2.2.1 | 1 |
| La1.4 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.1.4 | 1 |
| La1.7.1 | 2 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| La1;lineage4.9 | 1 |
| lineage3.1.2.1 | 4 |
| La1.6 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage1.2.1.1 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage3.1.2 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage4.3 | 1 |
| lineage2.2;lineage4 | 1 |
| La2;M.canetti | 1 |
| lineage2.2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.4 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.8.2 | 1 |
| M.canetti;lineage2.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 586 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045002 | RR-TB | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR1049743 | Sensitive | lineage4.6.1.1 | None | ERR4811708 | HR-TB | lineage4 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR266120 | Other | M.canetti | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR2517528 | RR-TB | lineage3 | nl | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR5087846 | Other | La1.8.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | SRR19303788 | Sensitive | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR5917710 | RR-TB | lineage4.1.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR2446566 | Other | lineage4.9 | None | ERR3275190 | Other | lineage3 | nl | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR5311077 | Other | La1.8.1 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR1049744 | Sensitive | lineage4.6.1.1 | None | ERR4769436 | Other | La1.3 | None | SRR1140716 | Other | lineage3 | None | SRR6046376 | Other | lineage3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR11049143 | Sensitive | lineage4.1.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR2446144 | Other | lineage3 | nl | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4797141 | Sensitive | lineage3 | None | SRR18572454 | RR-TB | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR867567 | RR-TB | lineage3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR11049020 | Other | lineage4.8 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | SRR7236330 | Other | La1.8.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR1140586 | Sensitive | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR4814748 | Other | lineage4.8 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4821408 | Sensitive | lineage4.1.2 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1049723 | MDR-TB | lineage4.6.1.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR1180137 | RR-TB | lineage2.2.1 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR26159043 | Other | lineage4.9 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2515352 | Sensitive | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR400443 | Sensitive | lineage1.2.1.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1183067 | Other | lineage4.9 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR3283032 | Other | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4796351 | Sensitive | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR1792025 | Other | La1.8.1 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | ERR4817189 | Other | lineage4.7 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786525 | RR-TB | lineage4.1;lineage4.8 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675221 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR5979407 | Other | lineage3 | None | ERR11466014 | Sensitive | lineage4.3.4.2.1 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323037 | Other | lineage4.9 | None | ERR12015084 | Other | lineage4.8 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5818672 | Other | lineage1.2.2.2 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | ERR4830353 | HR-TB | La1.7 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6044815 | RR-TB | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | SRR25827452 | MDR-TB | lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR1172234 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR12015083 | Other | La3;lineage4.8 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675222 | Other | La1.7 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1049736 | Sensitive | lineage4.9 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | RR-TB | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1183152 | Other | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR2509886 | Other | lineage3 | None | ERR5311087 | Other | La1.8.1 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1173770 | Other | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR4819241 | Other | lineage4.9 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR9786604 | Other | None | ERR9117709 | Other | None | SRR6789626 | Other | None | ERR234659 | HR-TB | None | ERR9787197 | Other | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR752229 | Other | lineage4.5 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4817692 | MDR-TB | lineage1.1.2;lineage4 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR2514390 | Sensitive | lineage3.1.2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046492 | Other | lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR6046839 | Other | lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR5311084 | Other | La1.8.1 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR038289 | Other | lineage4.3.3 | None | ERR4819932 | Other | lineage4.7 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4821053 | RR-TB | lineage3 | None | SRR1169194 | Other | lineage4.9 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR4815556 | RR-TB | lineage3 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SAMN02381005 | Sensitive | lineage4.6.1.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR4816322 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4769423 | Other | La1.3 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR3675487 | MDR-TB | M.canetti;lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR3283044 | Other | lineage4 | None | SRR1791696 | RR-TB | La1.8.1 | None | ERR990545 | RR-TB | lineage3 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR4815752 | Other | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR3675243 | MDR-TB | lineage4.9 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4828962 | Sensitive | lineage4.1.4 | it | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR3275196 | RR-TB | lineage2.2.1 | nl | SRR21469202 | Other | La1.7.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR7240492 | MDR-TB | La1.7.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR1062918 | Other | lineage3 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR4820586 | Other | lineage3 | gb | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SAMN02381047 | Sensitive | lineage4.6.1.1 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR3675572 | Other | None | ERR9786671 | Other | None | ERR4815604 | Other | None | ERR9786843 | Other | None | ERR4817069 | RR-TB | None | SRR1640750 | RR-TB | None | ERR11252736 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | SRR25827682 | Other | None | ERR4407463 | HR-TB | None | SRR3675236 | Other | None | ERR4816999 | Other | None | ERR4817060 | Other | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1792022 | Other | La1.8.1 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR3675275 | Other | lineage4.9 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR4821176 | Other | lineage2.2.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR3675507 | RR-TB | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR5341330 | Other | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1180440 | Other | lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR4821143 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1181256 | Other | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | DRR184629 | Other | lineage2.2.1 | None | SAMN02381037 | MDR-TB | lineage4.6.1.1 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR11342695 | MDR-TB | lineage4.8 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9786569 | Other | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4797037 | Pre-XDR-TB | lineage3.1.2 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | ERR3275220 | Other | lineage3 | nl | SRR1238559 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR3675214 | Other | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR266126 | Other | La2;M.canetti | None | SRR3675269 | RR-TB | lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR19303775 | Sensitive | lineage3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446509 | Other | lineage3 | nl | ERR867573 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR6046066 | Other | lineage4.9 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR4816610 | Other | lineage4.3.3 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR7645973 | Other | lineage4.3.4.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR13861381 | HR-TB | lineage4.9 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4820394 | Sensitive | lineage4.3.4.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR3797023 | MDR-TB | La1.8.1 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR2027263 | Other | lineage4 | None |
|---|
