Run ID: ERR323035
Sample name:
Date: 01-04-2023 00:48:02
Number of reads: 21784
Percentage reads mapped: 0.38
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 762206 | c.2400C>G | synonymous_variant | 0.83 |
rpoB | 762209 | c.2403C>G | synonymous_variant | 0.83 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.83 |
rpoB | 762243 | p.Arg813Lys | missense_variant | 0.83 |
rpoB | 762251 | c.2445G>C | synonymous_variant | 0.83 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 1.0 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 1.0 |
rpoB | 762275 | c.2469C>G | synonymous_variant | 1.0 |
rpoB | 762276 | p.Arg824Ser | missense_variant | 1.0 |
rpoB | 762281 | p.Glu825Asp | missense_variant | 1.0 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 1.0 |
rpoC | 762920 | c.-450C>G | upstream_gene_variant | 1.0 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 1.0 |
rpoB | 762925 | p.Thr1040Ile | missense_variant | 1.0 |
rpoC | 762932 | c.-438G>T | upstream_gene_variant | 1.0 |
rpoC | 762936 | c.-434_-432delTCGinsAGC | upstream_gene_variant | 1.0 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 1.0 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 1.0 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 1.0 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 0.89 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.8 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.8 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.8 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.8 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 0.8 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.8 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.8 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.8 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.8 |
rpoC | 763031 | c.-339T>A | upstream_gene_variant | 1.0 |
rpoC | 764557 | p.Asn396Lys | missense_variant | 1.0 |
rpoC | 764560 | c.1191T>G | synonymous_variant | 1.0 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 1.0 |
rpoC | 764575 | c.1206T>C | synonymous_variant | 1.0 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 1.0 |
rpoC | 764582 | p.Leu405Met | missense_variant | 1.0 |
rpoC | 764587 | c.1218C>G | synonymous_variant | 1.0 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 1.0 |
rpoC | 764641 | c.1272C>T | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 1.0 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 1.0 |
rpoC | 764668 | c.1299C>G | synonymous_variant | 1.0 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 1.0 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 1.0 |
rpoC | 764686 | c.1317C>T | synonymous_variant | 1.0 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 1.0 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 1.0 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 1.0 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472123 | n.278A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472256 | n.411T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472269 | n.424G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472279 | n.434T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472338 | n.493A>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472349 | n.504A>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472374 | n.529T>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472382 | n.537G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472390 | n.545T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472398 | n.553T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472415 | n.570T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472534 | n.689G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472544 | n.699C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472545 | n.700A>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472572 | n.727T>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472573 | n.728C>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472574 | n.729T>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472585 | n.740A>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472603 | n.758A>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472716 | n.871C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473038 | n.1193A>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1473838 | n.181_182insC | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473843 | n.186G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473851 | n.194G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473871 | n.214T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473881 | n.224A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473883 | n.226A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473887 | n.230T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473888 | n.231T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473890 | n.233T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473922 | n.265A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475066 | n.1409C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475067 | n.1410A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475079 | n.1422T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475080 | n.1423G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475092 | n.1435A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475106 | n.1449G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475109 | n.1452C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475116 | n.1459G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475122 | n.1465C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475132 | n.1475T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475136 | n.1479G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475137 | n.1480A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475791 | n.2134A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475878 | n.2221T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476266 | n.2609G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476279 | n.2622G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476339 | n.2682G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476417 | n.2760T>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476542 | n.2885T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476588 | n.2931A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476595 | n.2938C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476602 | n.2945G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476611 | n.2954T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476614 | n.2957A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476621 | n.2964C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476624 | n.2967T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476645 | n.2988A>G | non_coding_transcript_exon_variant | 1.0 |
ndh | 2102832 | p.Pro71Thr | missense_variant | 1.0 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 1.0 |