Rv0668 - c.1308C>G
Drug resistance types
60 Sensitive
75 RR-TB
37 HR-TB
45 MDR-TB
18 Pre-XDR-TB
2 XDR-TB
114 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 71 |
| La1.4 | 1 |
| La1.7.1 | 1 |
| lineage4.4.1.2 | 2 |
| lineage4.4.1.1 | 14 |
| lineage2.2.1 | 27 |
| lineage2.2.1.1 | 2 |
| lineage3 | 34 |
| lineage4.6.2.2 | 3 |
| lineage4.1.2.1 | 19 |
| lineage4.8 | 14 |
| lineage4.3.3 | 14 |
| lineage4 | 26 |
| lineage1.2.2 | 1 |
| lineage4.4.2 | 1 |
| lineage3.1.2 | 1 |
| 17 | |
| lineage3.1.1 | 4 |
| lineage4.2.1 | 2 |
| lineage2.2 | 2 |
| lineage4.1 | 2 |
| lineage1.2.1.1 | 1 |
| lineage4.3.4.2.1 | 7 |
| lineage4.6.1 | 8 |
| lineage4.6.1.1 | 3 |
| La1.8.2 | 1 |
| lineage3.1 | 1 |
| lineage4.6.1.2 | 4 |
| lineage4.1.2 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.1.1.3 | 8 |
| lineage4.3.4.2 | 2 |
| lineage1.1.1 | 1 |
| lineage6 | 2 |
| lineage1 | 1 |
| lineage4.6.3 | 1 |
| lineage4.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.1.1.3.1 | 2 |
| lineage4.2.1.1 | 1 |
| lineage1.1.3.1 | 3 |
| lineage4.3.4.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.7 | 1 |
| lineage1.2.2.2 | 1 |
| La1.8.1 | 11 |
| lineage4.1.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.1 | 1 |
| lineage1.1.2 | 3 |
| lineage5.1.1 | 1 |
| lineage4.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage2.2.2 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.3 | 2 |
| lineage4.9;La1.3 | 2 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.9;lineage2.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.6.1;lineage3.1.1 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 351 |
Geographic prevalence
Country level data for this variant is available for 11 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16156775 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18572454 | RR-TB | lineage4.9 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR18572456 | Sensitive | lineage4.9 | None | SRR19303775 | Other | lineage3 | None | SRR19303774 | Sensitive | lineage4.1.2.1 | None | SRR8692807 | Other | lineage4.9 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303779 | Sensitive | lineage4.8 | None | SRR19303788 | Sensitive | lineage4.8 | None | SRR19303813 | HR-TB | lineage4.8 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR8692800 | Other | lineage4 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | ERR4815777 | Other | lineage4.9 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692871 | Other | lineage4.9 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4814312 | Other | lineage4 | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | SRR8692887 | Other | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4815772 | Other | lineage4.4.1.1 | None | ERR4814714 | Other | lineage3 | None | ERR4815334 | Other | lineage3.1.1 | None | ERR4815394 | RR-TB | lineage4.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR2446544 | Sensitive | lineage3 | nl | ERR4814748 | Other | lineage4.8 | None | ERR4815502 | Other | lineage4.1 | None | SRR3675261 | Other | lineage1.2.1.1 | None | ERR4814976 | Other | lineage4.9 | None | ERR4814841 | Other | lineage4.1 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SAMN02381037 | MDR-TB | lineage4.6.1 | None | ERR4815556 | RR-TB | lineage3 | None | SAMN02381005 | Other | lineage4.6.1.1 | None | ERR4816964 | Other | lineage4.9 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4815909 | Other | lineage4.8 | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | ERR4816133 | Other | La1.8.2 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816227 | RR-TB | lineage3 | None | ERR4816631 | Other | lineage2.2.1 | None | ERR4817069 | RR-TB | None | ERR2229197 | Sensitive | lineage4 | None | ERR4817131 | Pre-XDR-TB | None | SRR3742667 | Sensitive | lineage4.9 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | ERR3275548 | Sensitive | lineage3 | nl | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4817310 | Other | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR2512986 | Other | lineage3 | None | ERR4817703 | Other | lineage1.1.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818785 | RR-TB | lineage4.1.2.1 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR2509886 | RR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR2512872 | Sensitive | lineage4.2.1.1 | None | ERR2512849 | RR-TB | lineage1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4817555 | RR-TB | lineage3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4818977 | RR-TB | lineage4.1.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4820265 | Other | lineage4.1.2.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4819093 | Other | lineage4.3.3 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4820266 | RR-TB | lineage3 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4819307 | RR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4820324 | Other | lineage4 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR4819414 | Other | lineage1.1.3.1 | gb | ERR4820746 | RR-TB | lineage3 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4820394 | Other | lineage4.3.4.2.1 | None | ERR4819730 | Other | lineage4.8 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819655 | Other | lineage4.8 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2514655 | Sensitive | lineage3 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR2514854 | Other | lineage4.3.3 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR1023509 | Other | None | ERR2514834 | Other | lineage4.7 | None | ERR4819933 | Other | lineage4.9 | None | ERR2515032 | Other | lineage3 | None | ERR4820586 | Other | lineage3 | gb | ERR4820151 | RR-TB | lineage4.8 | None | ERR2517457 | Sensitive | lineage3 | None | ERR4820184 | MDR-TB | lineage3 | gb | SAMN02381012 | MDR-TB | lineage4.4.1.1 | None | ERR4821007 | RR-TB | lineage1.2.2.2 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR2747656 | Other | La1.8.1 | None | SAMN02381047 | Sensitive | lineage4.6.1 | None | SRR6046096 | Other | lineage4.1.2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821981 | Other | lineage4.1.2.1 | None | ERR4821915 | RR-TB | lineage4.9 | None | ERR4821276 | Other | lineage3 | None | ERR4821214 | RR-TB | None | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4822169 | Other | lineage4.1.1.3 | gb | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821341 | Other | lineage4.3.4.1 | None | ERR4821409 | Other | lineage4.8 | None | ERR4822222 | Other | lineage3.1.2.2 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821746 | Other | lineage4.4.1.1 | gb | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044936 | Other | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046385 | Other | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046834 | Sensitive | lineage4.9 | None | ERR4829208 | RR-TB | lineage4.8 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046609 | Sensitive | lineage4.9 | None | SRR6046729 | Other | None | SRR6046815 | Other | lineage3 | None | ERR4829333 | RR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR5311095 | Other | La1.8.1 | None | ERR5311084 | Other | La1.8.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5311077 | RR-TB | La1.8.1 | None | ERR5311092 | Other | La1.8.1 | None | ERR5311087 | Other | La1.8.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7131160 | Sensitive | lineage3 | None | DRR184629 | Other | lineage2.2.1 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | ERR037504 | Other | lineage4.9.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR1023494 | Sensitive | lineage3 | None | ERR1063855 | Other | lineage4 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283049 | Sensitive | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439265 | Other | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3468578 | Other | La1.8.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR405191 | Other | lineage4.9 | None | ERR400350 | Sensitive | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188222 | MDR-TB | La1.8.1 | None | ERR4188213 | HR-TB | La1.8.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596906 | Sensitive | lineage1.1.2 | None | ERR4596937 | Sensitive | lineage1.1.2 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473279 | Other | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769423 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4769517 | Other | La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR5979407 | Other | lineage3 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR8975534 | Sensitive | lineage4.3.4.2.1 | None | ERR9119101 | Sensitive | lineage4.3.3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9787336 | Other | lineage6 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049629 | MDR-TB | lineage4.4.1.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049723 | MDR-TB | lineage4.6.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR1049743 | Sensitive | lineage4.6.1 | None | SRR1049744 | Sensitive | lineage4.6.1 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062902 | MDR-TB | lineage4.4.1.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062897 | MDR-TB | lineage4.4.1.1 | None | SRR1062937 | HR-TB | lineage4.6.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062927 | MDR-TB | lineage4.6.1 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SRR1140736 | RR-TB | None | SRR1140740 | RR-TB | lineage4.6.1.2 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173335 | Sensitive | lineage4.9 | None | SRR1173293 | MDR-TB | lineage4.6.1;lineage3.1.1 | None | SRR13888750 | Other | La2 | None | SRR1173740 | Other | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1180999 | Sensitive | lineage4.8 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR12882669 | RR-TB | lineage3.1.1 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173865 | Sensitive | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801749 | Sensitive | None |
|---|
