Run ID: SRR18572456
Sample name:
Date: 03-04-2023 19:55:53
Number of reads: 5593599
Percentage reads mapped: 93.17
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.1 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.11 |
rpoC | 763621 | c.252C>G | synonymous_variant | 0.13 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.12 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.13 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.1 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.11 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.11 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 0.12 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.14 |
rpoC | 764681 | p.Leu438Met | missense_variant | 0.15 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.13 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.12 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.12 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.1 |
fbiC | 1305250 | p.Arg774Gly | missense_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473908 | n.251C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474496 | n.839C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474584 | n.927C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474720 | n.1063C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475300 | n.1643G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475757 | n.2100_2101insG | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475764 | n.2107A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475768 | n.2111G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.22 |