Rv0668 - c.1377G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
35 Sensitive
31 RR-TB
18 HR-TB
27 MDR-TB
13 Pre-XDR-TB
0 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage6.1.1 | 2 |
| lineage4.9 | 66 |
| lineage4.1.2.1 | 5 |
| lineage4.8 | 12 |
| lineage3 | 13 |
| La1.3 | 2 |
| lineage4.6.2.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.6.1.1 | 2 |
| lineage2.2.1 | 18 |
| La1.8.1 | 5 |
| La1.6 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.4 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.3.2.1 | 3 |
| lineage3;lineage4 | 1 |
| La1.2.BCG | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.3.3;lineage4.8 | 1 |
| 3 | |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2.1 | 4 |
| lineage3.1.2.1 | 2 |
| lineage4.4.1.2 | 2 |
| lineage4.3.3 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.9.1 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| La1.4 | 1 |
| lineage3.1.1 | 2 |
| lineage4.1.2 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 175 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3799304 | Other | lineage6.1.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR2432997 | Other | lineage4.8 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769436 | Other | La1.3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR5979407 | Other | lineage3 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR5311077 | Other | La1.8.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR176740 | Other | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1915487 | Other | La1.2.BCG | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4798823 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR1063855 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR3468488 | Other | La1.8.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1140716 | Other | lineage3 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR18572456 | Sensitive | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR736848 | Other | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4818904 | Other | lineage4.8 | None | SRR5341330 | Other | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR3077969 | Other | La1.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR926163 | Other | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196545 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR7240033 | Other | La1.8.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4817069 | RR-TB | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR987722 | MDR-TB | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1173281 | Other | lineage3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR4817204 | Other | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None |
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