TB-Profiler result

Run: ERR4814312
Summary

Run ID: ERR4814312

Sample name:

Date: 01-04-2023 13:13:22

Number of reads: 370830

Percentage reads mapped: 36.59

Strain: lineage4

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.77 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5348 c.111dupC frameshift_variant 0.15
gyrB 6083 p.Gly282Cys missense_variant 0.33
gyrA 6415 c.-887G>T upstream_gene_variant 0.2
gyrA 7362 p.Glu21Gln missense_variant 1.0
rpoC 763022 c.-348C>T upstream_gene_variant 0.22
rpoC 763028 c.-342T>C upstream_gene_variant 0.25
rpoC 763031 c.-339T>C upstream_gene_variant 0.38
rpoB 763038 p.Thr1078Ala missense_variant 0.4
rpoC 763043 c.-327G>C upstream_gene_variant 0.4
rpoC 763049 c.-321G>A upstream_gene_variant 0.2
rpoC 763053 c.-317T>C upstream_gene_variant 0.36
rpoC 763070 c.-300T>C upstream_gene_variant 0.45
rpoB 763077 p.Val1091Thr missense_variant 0.45
rpoC 763082 c.-288C>T upstream_gene_variant 0.18
rpoC 763103 c.-267G>C upstream_gene_variant 0.5
rpoC 763115 c.-255T>C upstream_gene_variant 0.36
rpoB 763119 p.Asn1105Asp missense_variant 0.36
rpoC 763127 c.-243G>C upstream_gene_variant 0.22
rpoC 763655 p.Glu96Lys missense_variant 0.18
rpoC 763666 c.297G>C synonymous_variant 0.17
rpoC 763675 c.306C>G synonymous_variant 0.27
rpoC 763696 c.327T>C synonymous_variant 0.14
rpoC 763699 c.330G>T synonymous_variant 0.31
rpoC 763708 c.339G>C synonymous_variant 0.42
rpoC 763714 c.345G>C synonymous_variant 0.38
rpoC 763717 c.348T>C synonymous_variant 0.4
rpoC 763718 p.Leu117Val missense_variant 0.27
rpoC 763723 c.354G>C synonymous_variant 0.36
rpoC 763724 p.Asp119Asn missense_variant 0.36
rpoC 763729 c.360G>C synonymous_variant 0.33
rpoC 763732 c.363C>G synonymous_variant 0.36
rpoC 763735 c.366G>C synonymous_variant 0.42
rpoC 763744 c.375G>C synonymous_variant 0.33
rpoC 763751 p.Ile128Val missense_variant 0.42
rpoC 763772 p.Val135Met missense_variant 0.2
rpoC 764573 p.Leu402Ile missense_variant 0.4
rpoC 764578 c.1209C>G synonymous_variant 0.4
rpoC 764581 c.1212T>C synonymous_variant 0.5
rpoC 764582 p.Leu405Met missense_variant 0.5
rpoC 764602 c.1233C>T synonymous_variant 0.5
rpoC 764605 c.1236G>T synonymous_variant 0.5
rpoC 764611 c.1242G>T synonymous_variant 0.56
rpoC 764626 c.1257C>T synonymous_variant 0.18
rpoC 764632 c.1263T>C synonymous_variant 0.5
rpoC 764647 c.1278C>T synonymous_variant 0.56
rpoC 764650 c.1281G>T synonymous_variant 0.53
rpoC 764653 c.1284G>C synonymous_variant 0.5
rpoC 764656 c.1287C>T synonymous_variant 0.38
rpoC 764662 c.1293G>C synonymous_variant 0.46
rpoC 764677 c.1308C>G synonymous_variant 0.5
rpoC 764678 p.Lys437Gln missense_variant 0.5
rpoC 764706 p.Leu446Gln missense_variant 0.43
rpoC 764713 c.1344G>C synonymous_variant 0.38
rpoC 764731 c.1362G>C synonymous_variant 0.2
rpoC 764838 p.Val490Asp missense_variant 0.2
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 777121 p.His454Tyr missense_variant 0.2
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 0.17
rpsL 781796 p.Met79Ile missense_variant 0.21
rpsL 781802 c.243G>C synonymous_variant 0.2
rpsL 781811 c.252C>T synonymous_variant 0.21
rpsL 781814 c.255C>T synonymous_variant 0.2
rpsL 781817 c.258G>T synonymous_variant 0.2
rpsL 781832 c.273T>C synonymous_variant 0.2
rpsL 781835 c.276T>C synonymous_variant 0.2
Rv1258c 1406867 c.474G>A synonymous_variant 0.2
embR 1416637 p.Asp237Glu missense_variant 0.17
embR 1417270 c.78C>T synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.4
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.69
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.15
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.84
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.37
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.79
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.81
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.83
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.95
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.83
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.86
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.15
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.56
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.97
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.89
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.93
rrs 1472274 n.429A>G non_coding_transcript_exon_variant 0.45
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.67
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.67
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.67
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.75
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.75
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.5
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.5
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.67
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.67
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.6
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.21
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.71
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.71
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.71
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.78
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.18
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.79
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.84
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.68
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.63
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.44
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.17
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.81
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.77
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.7
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.33
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.75
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.35
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.18
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.74
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.26
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.74
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.76
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.77
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.72
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.24
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.72
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.74
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.9
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.16
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.58
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.89
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.23
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.63
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.22
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.89
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.96
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.92
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.85
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.97
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.84
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.83
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 1.0
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.75
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.82
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.86
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.21
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.65
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.78
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.88
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.74
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.92
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.88
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.7
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.81
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.76
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.11
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.68
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.11
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.72
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.11
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.25
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.92
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.67
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.22
rrs 1473284 n.1439A>T non_coding_transcript_exon_variant 0.22
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.33
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.67
rrs 1473314 n.1469A>G non_coding_transcript_exon_variant 0.25
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.25
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.75
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.25
rrl 1473384 n.-274A>G upstream_gene_variant 0.5
rrl 1473678 n.21A>G non_coding_transcript_exon_variant 0.5
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.6
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.6
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.77
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.71
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474228 n.571T>C non_coding_transcript_exon_variant 0.11
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.89
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 0.23
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.23
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.33
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.6
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.6
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.67
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.8
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.8
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.6
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.6
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.67
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.6
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.4
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.5
rrl 1474716 n.1059A>C non_coding_transcript_exon_variant 0.5
rrl 1474734 n.1077G>C non_coding_transcript_exon_variant 0.75
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.83
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.6
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.5
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.6
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.5
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.75
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.86
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.86
rrl 1475031 n.1374G>C non_coding_transcript_exon_variant 1.0
rrl 1475059 n.1403_1404insTA non_coding_transcript_exon_variant 1.0
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 1.0
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.6
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.6
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.6
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.5
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.6
rrl 1475765 n.2108A>C non_coding_transcript_exon_variant 0.67
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.6
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.6
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.27
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.89
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.7
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.6
rrl 1475897 n.2240T>G non_coding_transcript_exon_variant 0.33
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.71
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.71
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.43
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.5
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.67
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.67
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.5
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.67
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.67
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.67
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.8
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.71
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.29
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.38
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.5
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.62
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.2
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.5
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.2
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.22
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.22
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.29
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.47
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.83
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.2
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.2
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.81
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.12
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.13
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.13
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.67
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.18
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.4
rrl 1476298 n.2641C>A non_coding_transcript_exon_variant 0.4
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.4
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.5
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.67
rrl 1476309 n.2652G>T non_coding_transcript_exon_variant 0.67
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.18
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.22
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.71
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.12
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.71
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.15
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.12
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.72
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.61
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.63
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.59
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.75
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.67
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.67
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.5
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.8
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.8
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.8
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.33
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.33
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.67
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.83
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.67
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.5
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.44
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.4
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.75
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.75
rpsA 1834183 c.642T>C synonymous_variant 0.1
rpsA 1834195 c.654G>C synonymous_variant 0.16
rpsA 1834225 c.684C>T synonymous_variant 0.14
rpsA 1834228 c.687C>T synonymous_variant 0.21
rpsA 1834234 c.693G>C synonymous_variant 0.33
rpsA 1834240 c.699T>C synonymous_variant 0.36
rpsA 1834246 c.705G>T synonymous_variant 0.41
rpsA 1834249 c.708T>C synonymous_variant 0.44
rpsA 1834261 c.720A>G synonymous_variant 0.48
rpsA 1834264 c.723G>C synonymous_variant 0.46
rpsA 1834294 c.753G>C synonymous_variant 0.53
rpsA 1834298 p.Gln253Glu missense_variant 0.5
rpsA 1834306 c.765T>C synonymous_variant 0.43
rpsA 1834307 p.Asp256Gln missense_variant 0.43
rpsA 1834312 c.771G>A synonymous_variant 0.21
rpsA 1834327 c.786G>T synonymous_variant 0.36
rpsA 1834345 c.804C>T synonymous_variant 0.18
rpsA 1834348 c.807T>C synonymous_variant 0.2
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103092 c.-50T>C upstream_gene_variant 0.17
ndh 2103142 c.-100A>T upstream_gene_variant 0.29
Rv1979c 2222185 c.979delT frameshift_variant 0.33
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2290028 c.-787C>T upstream_gene_variant 0.12
ribD 2987402 c.564C>T synonymous_variant 0.29
Rv2752c 3065805 c.387C>T synonymous_variant 1.0
Rv3083 3449859 c.1356G>T synonymous_variant 0.14
fprA 3475081 p.Trp359Gly missense_variant 0.33
whiB7 3568866 c.-187C>T upstream_gene_variant 0.15
clpC1 4038860 c.1845G>C synonymous_variant 0.29
clpC1 4038878 c.1827A>G synonymous_variant 0.15
clpC1 4038911 c.1794G>T synonymous_variant 0.18
clpC1 4038917 c.1788C>T synonymous_variant 0.22
clpC1 4040009 c.696C>G synonymous_variant 0.15
clpC1 4040015 c.690G>C synonymous_variant 0.23
clpC1 4040018 c.687G>C synonymous_variant 0.15
clpC1 4040021 c.684A>C synonymous_variant 0.23
clpC1 4040024 c.681A>G synonymous_variant 0.23
clpC1 4040042 c.663C>T synonymous_variant 0.15
clpC1 4040066 c.639G>C synonymous_variant 0.3
clpC1 4040096 c.609G>C synonymous_variant 0.33
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244593 p.Ala454Val missense_variant 0.29
embB 4246496 c.-18A>T upstream_gene_variant 0.17
embB 4246861 c.348C>T synonymous_variant 0.15
embB 4246876 p.Gln121His missense_variant 0.14
embB 4248686 p.Gly725Arg missense_variant 0.18
ethR 4327854 p.Met102Ile missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0