Rv0668 - c.1218C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
21 Sensitive
12 RR-TB
5 HR-TB
19 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
13 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 6 |
| lineage4.6.1.2 | 3 |
| lineage4.9 | 11 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1.8.1 | 2 |
| lineage1.2.2.2 | 1 |
| lineage1.1.3.2;lineage4 | 1 |
| lineage4.6.1.1 | 8 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.1 | 4 |
| lineage2.2.1.1 | 1 |
| lineage4.3.3 | 3 |
| lineage4.3.4.2 | 1 |
| La1.7.1 | 2 |
| lineage4.1.2.1 | 1 |
| lineage2.2.1 | 3 |
| lineage4.6.5 | 2 |
| lineage2.2.2 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 72 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | ERR4820394 | Sensitive | lineage4.3.4.2.1 | None | SRR1140586 | Sensitive | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR5311084 | Other | La1.8.1 | None | SRR10321145 | HR-TB | lineage1.2.2.2 | None | ERR181750 | Sensitive | lineage1.1.3.2;lineage4 | None | SRR1049743 | Sensitive | lineage4.6.1.1 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | ERR400350 | Sensitive | lineage4.9 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR21469202 | Other | La1.7.1 | None | SRR6397389 | Sensitive | lineage4.1.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1049735 | Sensitive | lineage4.9 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | ERR2515352 | Sensitive | lineage2.2.1 | None | SRR1049736 | Sensitive | lineage4.9 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | DRR213597 | MDR-TB | lineage2.2.2 | None | ERR400443 | Sensitive | lineage1.2.1.2.1 | None | ERR4797141 | Sensitive | lineage3 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02381047 | Sensitive | lineage4.6.1.1 | None | SAMN02381037 | MDR-TB | lineage4.6.1.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR1049723 | MDR-TB | lineage4.6.1.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR1049744 | Sensitive | lineage4.6.1.1 | None | SRR6045002 | RR-TB | lineage4.9 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR1049629 | MDR-TB | lineage4.4.1.1 | None | SAMN02381005 | Sensitive | lineage4.6.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR1062927 | MDR-TB | lineage4.6.1.1 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SAMN02381012 | MDR-TB | lineage4.4.1.1 | None | ERR11466014 | Sensitive | lineage4.3.4.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR5311087 | Other | La1.8.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
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