Run ID: ERR400350
Sample name:
Date: 01-04-2023 03:44:35
Number of reads: 37916
Percentage reads mapped: 1.2
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 764377 | c.1008C>G | synonymous_variant | 0.67 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.8 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.83 |
rpoC | 764392 | c.1023C>T | synonymous_variant | 0.83 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.83 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 0.83 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 1.0 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 1.0 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 1.0 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 1.0 |
rpoC | 764450 | p.Gly361Arg | missense_variant | 1.0 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 1.0 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 1.0 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 1.0 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 1.0 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 1.0 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 1.0 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 1.0 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 1.0 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 1.0 |
rpoC | 764527 | c.1158C>G | synonymous_variant | 1.0 |
rpoC | 764533 | c.1164C>G | synonymous_variant | 1.0 |
rpoC | 764537 | p.Pro390Ala | missense_variant | 1.0 |
rpoC | 764540 | p.Val391Ile | missense_variant | 1.0 |
rpoC | 764543 | c.1176delC | frameshift_variant | 1.0 |
rpoC | 764549 | c.1181_1182delCG | frameshift_variant | 1.0 |
rpoC | 764553 | p.Gly395Ala | missense_variant | 1.0 |
rpoC | 764557 | c.1188_1189insAAG | conservative_inframe_insertion | 1.0 |
rpoC | 764560 | c.1191T>G | synonymous_variant | 1.0 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 1.0 |
rpoC | 764575 | c.1206T>C | synonymous_variant | 1.0 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 1.0 |
rpoC | 764582 | p.Leu405Met | missense_variant | 1.0 |
rpoC | 764587 | c.1218C>G | synonymous_variant | 1.0 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764641 | c.1272C>T | synonymous_variant | 1.0 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 |
rpoC | 764656 | c.1287C>G | synonymous_variant | 1.0 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 1.0 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 1.0 |
rpoC | 764671 | c.1302G>C | synonymous_variant | 1.0 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 1.0 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 1.0 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 1.0 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 1.0 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 1.0 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472603 | n.758A>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472970 | n.1125C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472974 | n.1129A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472975 | n.1130T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472993 | n.1148G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473008 | n.1163C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473038 | n.1193A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473054 | n.1209C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476266 | n.2609G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476279 | n.2622G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476339 | n.2682G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476417 | n.2760T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476516 | n.2859G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476521 | n.2864C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476532 | n.2876_2877insCG | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476588 | n.2931A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476611 | n.2954T>C | non_coding_transcript_exon_variant | 1.0 |