Rv0668 - c.1254C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
58 Sensitive
23 RR-TB
25 HR-TB
23 MDR-TB
12 Pre-XDR-TB
2 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 3 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.1.2.1 | 6 |
| lineage4.9 | 73 |
| lineage4.8.1 | 3 |
| lineage4.8 | 8 |
| lineage2.2.1 | 25 |
| lineage3.1.2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.2.1 | 1 |
| lineage3 | 4 |
| lineage1.2.1.2.1 | 1 |
| La1.3 | 2 |
| lineage4 | 2 |
| La1.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.2.2 | 3 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.9.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.7 | 1 |
| lineage4.3.3;lineage4.9 | 2 |
| lineage4.3.3 | 5 |
| lineage4.1.1.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage6.1.3 | 1 |
| lineage4.1.2 | 2 |
| La1.8.1 | 4 |
| lineage4.1.1.3.1 | 2 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage2.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.8.2 | 1 |
| M.canetti;lineage1 | 1 |
| La2 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.1.3.1 | 2 |
| lineage3;lineage4.9 | 1 |
| lineage4.3.2.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 2 | |
| lineage2.2.2;lineage4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| La1.4 | 1 |
| lineage4.4.2 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 194 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4820394 | Sensitive | lineage4.3.4.2.1 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR6131515 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4817171 | RR-TB | lineage4.1.2.1 | gb | ERR4817664 | Sensitive | lineage4.1.2.1 | gb | SRR16156804 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6044952 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR400443 | Sensitive | lineage1.2.1.2.1 | None | ERR4769423 | Other | La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4811708 | HR-TB | lineage4 | None | ERR4769418 | Other | La1.2 | None | ERR4816852 | Other | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR1062869 | Sensitive | lineage4.9.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR4817189 | Other | lineage4.7 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR751326 | Other | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR1062867 | Sensitive | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR5311077 | Other | La1.8.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1062865 | Sensitive | lineage2.2.2 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR5341387 | Other | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR4831618 | MDR-TB | lineage2.1 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | SRR1013527 | Other | lineage2.2.1 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR1791747 | Other | La1.8.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR18511647 | Sensitive | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675246 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR11049390 | Sensitive | lineage4.1.2.1 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1062868 | Sensitive | lineage4.3.2.1;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR1063896 | Sensitive | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR1013528 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SRR1013532 | Sensitive | lineage4.3.2;lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR1023494 | Sensitive | lineage3 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR1183067 | Other | lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR400350 | Sensitive | lineage4.9 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR16278274 | Other | La1.4 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR1013530 | Other | lineage4.9.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR7236330 | Other | La1.8.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None |
|---|
