Rv0668 - c.1293G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
90 Sensitive
48 RR-TB
35 HR-TB
47 MDR-TB
17 Pre-XDR-TB
1 XDR-TB
101 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage5.1.1 | 1 |
| lineage4.9 | 113 |
| lineage3 | 15 |
| lineage2.2.1 | 40 |
| lineage2.2.2 | 5 |
| lineage4.8 | 18 |
| La3;lineage4.9 | 8 |
| La1.8.1 | 5 |
| lineage1.2.2.2 | 2 |
| lineage4.6.1.2 | 5 |
| lineage4.3.4.2.1 | 5 |
| lineage4.7 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.3.3 | 6 |
| lineage4.4.1.1.1 | 3 |
| lineage4.1.1.3 | 6 |
| lineage4.1.2 | 4 |
| lineage4.3.2.1 | 5 |
| lineage1.1.1.1 | 1 |
| lineage4.2.2.1 | 2 |
| La2 | 1 |
| lineage6 | 1 |
| lineage3.1.1 | 3 |
| lineage4.4.2 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage3;lineage4.9 | 2 |
| lineage3.1.3 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.8.1 | 3 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage4.1.2.1 | 12 |
| lineage1.1.1 | 1 |
| lineage4.3.3;lineage4.8 | 4 |
| 2 | |
| lineage2;lineage4.9 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage3;lineage4 | 2 |
| lineage4.9.1 | 2 |
| lineage4.2.1 | 3 |
| lineage1 | 2 |
| lineage1.1.2 | 2 |
| lineage4.1 | 1 |
| lineage4.1.3 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4 | 4 |
| lineage4.1.1.1 | 2 |
| La1.6 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.2 | 1 |
| La1.7;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.4.1.2 | 1 |
| La1.3 | 2 |
| lineage1.1.3.3 | 1 |
| lineage4.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 339 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR751345 | Other | lineage5.1.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR5979407 | Other | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR4188213 | Other | La1.8.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4819772 | Other | lineage1.1.3.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR13888750 | Other | La2 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR16149126 | MDR-TB | lineage4.2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR4188222 | Other | La1.8.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1023509 | Other | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4818522 | Other | lineage3 | None | ERR4814748 | Other | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | ERR2509886 | Other | lineage3 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4817915 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR4820151 | Other | lineage4.8 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4798823 | HR-TB | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675552 | Other | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR4818988 | Other | lineage1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR4815502 | Other | lineage4.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR4821981 | Other | lineage4.1.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR4818126 | Other | lineage1 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | SRR7496471 | Sensitive | lineage4 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR4821245 | Other | lineage4.1.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11462861 | Other | La1.8.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1181349 | Sensitive | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR19303813 | Sensitive | lineage4.8 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR3468488 | Other | La1.8.1 | None | ERR4818407 | Other | lineage4.3.2 | None | DRR185024 | Other | lineage2.2.2 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4821007 | Other | lineage1.2.2.2 | None | SRR1173281 | Other | lineage3 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4822222 | Other | lineage3.1.2.2 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR4819655 | Other | lineage4.8 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4820324 | Other | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR4815777 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6046839 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821408 | Sensitive | lineage4.1.2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4820266 | Sensitive | lineage3 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR2446566 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4769423 | Other | La1.3 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4811708 | HR-TB | lineage4 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR11466444 | Sensitive | lineage4.3.4.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR2432997 | Other | lineage4.8 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769436 | Other | La1.3 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
