Run ID: ERR11049143
Sample name:
Date: 31-03-2023 12:36:12
Number of reads: 3697490
Percentage reads mapped: 97.95
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.99 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.17 |
mshA | 576482 | p.Val379Leu | missense_variant | 0.12 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.98 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.13 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.13 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.14 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.13 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.12 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.13 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.11 |
rpoC | 764651 | c.1282_1284delTCGinsAGC | synonymous_variant | 0.11 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.99 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303858 | p.Gly310Arg | missense_variant | 0.92 |
Rv1258c | 1407079 | c.261delC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169041 | c.1572G>A | synonymous_variant | 0.3 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.5 |
PPE35 | 2169047 | p.Ile522Val | missense_variant | 0.47 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 1.0 |
PPE35 | 2169056 | c.1557A>G | synonymous_variant | 0.47 |
PPE35 | 2169059 | c.1554G>A | synonymous_variant | 0.53 |
PPE35 | 2169063 | p.Met517Thr | missense_variant | 1.0 |
PPE35 | 2169065 | p.Ala516Ile | missense_variant | 0.53 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 0.53 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.43 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ahpC | 2725938 | c.-255G>T | upstream_gene_variant | 1.0 |
ahpC | 2725939 | c.-254C>T | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.16 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.59 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.29 |
rpoA | 3878618 | c.-111A>C | upstream_gene_variant | 0.23 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.22 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.28 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.98 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.43 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |