Rv0668 - c.1282_1284delTCGinsAGC
Drug resistance types
24 Sensitive
6 RR-TB
26 HR-TB
23 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
154 Other
lineage Counts
| lineage | Count |
|---|---|
| 24 | |
| lineage4.9 | 32 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.2.1 | 12 |
| lineage4.1.2.1 | 14 |
| lineage4.1 | 1 |
| lineage2.1;lineage4.9 | 14 |
| lineage4.8.1 | 3 |
| lineage3.1.2.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.8 | 7 |
| M.canetti | 11 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage2 | 1 |
| lineage4.3.3 | 4 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;lineage4.9 | 3 |
| lineage2.1 | 5 |
| La3;lineage1.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.2.2.2 | 3 |
| La1.6;La3;lineage4.9 | 2 |
| La3;M.canetti | 9 |
| lineage4.3.4.2.1 | 2 |
| lineage3 | 2 |
| lineage2.2.2 | 1 |
| lineage4 | 2 |
| lineage4.1.1.1 | 4 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La3 | 2 |
| lineage4.9;lineage6.3 | 8 |
| La3;lineage2.2.1 | 2 |
| lineage3.1 | 1 |
| lineage4.6.2.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.1.2 | 2 |
| La2;M.canetti | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4.8 | 2 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage1.1.3.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.1.1.3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage4.7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.3.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage2;lineage4 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 238 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR1173633 | Other | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR29050928 | Other | lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR2514390 | Sensitive | lineage3.1.2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR29016780 | Other | lineage4.9 | None | ERR1336822 | Sensitive | M.canetti | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175074 | Other | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR3797069 | Other | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196677 | Other | lineage2.2 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR867567 | RR-TB | lineage3 | None | ERR1035157 | Other | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR29096900 | Sensitive | lineage4.3.4.2 | None | ERR11049020 | Other | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR702406 | Other | lineage2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR7496509 | Other | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR1043164 | Other | La3;M.canetti | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR25827682 | Other | None | ERR4817060 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR21690574 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1184372 | MDR-TB | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818615 | Sensitive | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR29051093 | Other | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR4796577 | HR-TB | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR266125 | Other | La3;M.canetti | None | SRR1196583 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR26159043 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR7821123 | Other | lineage1.1.3.2 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR266120 | Sensitive | M.canetti | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR1336820 | Sensitive | La3;M.canetti | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9117709 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675549 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR502912 | Other | lineage2.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR1043163 | Other | La3;M.canetti | None | SRR3675221 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR4819781 | Other | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1173363 | Other | None | SRR24061597 | Sensitive | M.canetti | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196768 | MDR-TB | None | ERR551179 | Sensitive | M.canetti | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675275 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1173788 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR3597004 | Sensitive | M.canetti | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4817735 | Other | lineage4.8 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR7496517 | Other | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR11049143 | Sensitive | lineage4.1.2.1 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR1173218 | Other | lineage4.3.3 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR10522783 | Sensitive | M.canetti | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR4816999 | Other | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR18289195 | Sensitive | M.canetti | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3283044 | Other | lineage4 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR551181 | Sensitive | M.canetti | None | SRR1165699 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR11081258 | Other | lineage4.8 | None | SRR28119777 | Other | lineage4.9 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR551182 | Sensitive | M.canetti | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR551180 | Sensitive | M.canetti | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR1172857 | Other | None |
|---|
